Pairwise Alignments

Query, 179 a.a., hypothetical protein from Sphingobium sp. HT1-2

Subject, 205 a.a., RNA polymerase subunit sigma from Pontibacter actiniarum KMM 6156, DSM 19842

 Score = 57.8 bits (138), Expect = 1e-13
 Identities = 45/143 (31%), Positives = 64/143 (44%), Gaps = 9/143 (6%)

Query: 34  LRGFYRRRVRGADDDIEDMVQDTLIAVHTRRATYDPERAFTAWLYAVARYKMIDHFRRVG 93
           LRGF  +RV    +  +D++Q   + V+         +   AWLY V R  + D FR   
Sbjct: 31  LRGFVEKRVPDKAE-ADDILQQLYLKVYANCEQLQEVKNIKAWLYQVTRNAVYDFFRESS 89

Query: 94  RLRPIDDLADSLVADEFEASSIARLDINDLLEQ----LPPKQARMIRAIRLEGLSVAEAA 149
           R + I +L       + E    AR ++  L+E     LP + A  +R   LEG+S  E A
Sbjct: 90  RRQSIGELE----LPDGELPGSARHEVEALVEPFIKLLPAEYAEALRLSELEGISQKEIA 145

Query: 150 SAEGIGESDVKVSVHRGLKALMA 172
              GI  S  K  V RG + L A
Sbjct: 146 GRLGISYSGAKSRVQRGRERLKA 168