Pairwise Alignments

Query, 179 a.a., hypothetical protein from Sphingobium sp. HT1-2

Subject, 185 a.a., RNA polymerase subunit sigma-70 from Pontibacter actiniarum KMM 6156, DSM 19842

 Score = 41.6 bits (96), Expect = 8e-09
 Identities = 44/168 (26%), Positives = 73/168 (43%), Gaps = 15/168 (8%)

Query: 18  GDAAAHAALLRLLVPLLRGFYRRRVRGADDDIEDMVQDTLIAVHTRRATYDPE--RAFTA 75
           GD  A + L  +    L G   + V+  ++  ED++Q+  + +     +YD    R FT 
Sbjct: 21  GDTKAVSLLYDMYSATLFGVVLQIVK-VEETAEDVLQEAFVKIWNSFQSYDASKGRLFT- 78

Query: 76  WLYAVARYKMIDHFR----RVG---RLRPIDDLADSLVADEFEASSIARLDINDLLEQLP 128
           W+  + R   ID  R    RV    R  P    AD + AD F+   I    + ++ E L 
Sbjct: 79  WMINICRNLAIDKIRSKQHRVSLQTREIPASPRAD-MGADNFKPEHIG---LREITETLS 134

Query: 129 PKQARMIRAIRLEGLSVAEAASAEGIGESDVKVSVHRGLKALMARVHG 176
           P+Q ++I  +  EG++ +E A    I    VK      ++ L+    G
Sbjct: 135 PEQKQIIDLMYFEGMTQSEIAEEYQIPLGTVKTRARSAIRTLVKLFKG 182