Pairwise Alignments

Query, 179 a.a., hypothetical protein from Sphingobium sp. HT1-2

Subject, 191 a.a., RNA polymerase sigma-70 factor, Bacteroides expansion family 1 from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 45.8 bits (107), Expect = 4e-10
 Identities = 45/161 (27%), Positives = 69/161 (42%), Gaps = 11/161 (6%)

Query: 18  GDAAAHAALLRLLVPLLRGFYRRRVRGADDDIEDMVQDTLIAVHTRRATYDPERAFTAWL 77
           GD+ A  A+  L    L     +RV G  +  EDMVQD       +RA+    ++  ++L
Sbjct: 15  GDSEAFNAVYALYWKKLYFHAYKRV-GTAELAEDMVQDVFFQFWLKRASLVITKSIESYL 73

Query: 78  YAVARYKMIDHFR-RVGRLRPIDDLADSLVADEFEASSIARLDINDLL-------EQLPP 129
             + + K++ HFR +       D+L   L   + +     R+D  DLL       E+LP 
Sbjct: 74  MGMLKNKILMHFREKYAASEKYDELVRHLSVHDSDTE--RRIDYGDLLSHVDELIERLPE 131

Query: 130 KQARMIRAIRLEGLSVAEAASAEGIGESDVKVSVHRGLKAL 170
           +   + R  R E LS  E A    I    V+  +H  L  L
Sbjct: 132 QSKHVFRLSRKEFLSNMEIADRLQISVKTVEYHIHYSLTYL 172