Pairwise Alignments

Query, 179 a.a., hypothetical protein from Sphingobium sp. HT1-2

Subject, 162 a.a., RNA polymerase sigma factor, sigma-70 family from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 45.4 bits (106), Expect = 5e-10
 Identities = 34/129 (26%), Positives = 57/129 (44%), Gaps = 4/129 (3%)

Query: 47  DDIEDMVQDTLIAVHTRRATYDPERAFTAWLYAVARYKMIDHFRRVGR---LRPIDDLAD 103
           D+ ED VQ+ L     +R         T W+  V + + +   R   +   +   D++ +
Sbjct: 28  DEAEDAVQEALEKAWHQREVLQKMENPTGWMVKVVKNQSLQKLRERQKWVVIEAEDEIPE 87

Query: 104 SLVADEFEASSIARLDINDLLEQLPPKQARMIRAIRLEGLSVAEAASAEGIGESDVKVSV 163
             VA+  E S   +L +   L +LP KQ  + +   +EGL+  E A    I    VKV++
Sbjct: 88  VPVAETEEVSPAVKL-VFRFLRELPEKQQEVFQLREVEGLTYEEIAEYMDISMDQVKVNM 146

Query: 164 HRGLKALMA 172
            R  K L +
Sbjct: 147 FRARKKLQS 155