Pairwise Alignments

Query, 179 a.a., hypothetical protein from Sphingobium sp. HT1-2

Subject, 188 a.a., RNA polymerase sigma factor from Agrobacterium fabrum C58

 Score = 48.5 bits (114), Expect = 7e-11
 Identities = 38/137 (27%), Positives = 59/137 (43%), Gaps = 3/137 (2%)

Query: 31  VPLLRGFYRRRVRGADDDIEDMVQDTLIAVHTRRATYDPERAFTAWLYAVARYKMIDHFR 90
           +P LR F    +R  D   +D+VQDT++    ++ ++ P     AWL  + R +     R
Sbjct: 20  LPNLRAFAISLIRSRDR-ADDLVQDTIMKAWAKQDSFQPGTNMRAWLVTILRNEFYSQIR 78

Query: 91  RVGR-LRPIDDLADS-LVADEFEASSIARLDINDLLEQLPPKQARMIRAIRLEGLSVAEA 148
           + GR ++  D +  S L     +  S+   D    L +LP  Q   I  I   G +  EA
Sbjct: 79  KSGREVQDTDGVYTSRLSVPPEQHGSVDLQDFRTALAKLPDDQREAILLIGASGFAYEEA 138

Query: 149 ASAEGIGESDVKVSVHR 165
           A   G     +K  V R
Sbjct: 139 AEICGCPVGTIKSRVSR 155