Pairwise Alignments

Query, 179 a.a., hypothetical protein from Sphingobium sp. HT1-2

Subject, 169 a.a., ECF family sigma factor from Agrobacterium fabrum C58

 Score =  134 bits (336), Expect = 1e-36
 Identities = 72/169 (42%), Positives = 108/169 (63%), Gaps = 2/169 (1%)

Query: 12  MIDGLGGDAAAHAALLRLLVPLLRGFYRRRVR-GADDDIEDMVQDTLIAVHTRRATYDPE 70
           M+  L GD A++  LL  L  LL  +Y RR+   A  D+ED+VQ+TL+++H +R TYD  
Sbjct: 1   MLRSLDGDEASYRHLLHALRRLLVAYYGRRMADAARADVEDLVQETLLSLHAKRETYDRA 60

Query: 71  RAFTAWLYAVARYKMIDHFRRVGRLRPID-DLADSLVADEFEASSIARLDINDLLEQLPP 129
           R FTAW +++ARYK+IDH+R  GR    + +L ++L A+    +  AR+D+  LL +LP 
Sbjct: 61  RPFTAWFFSIARYKLIDHYRGRGRRMFSEVELDETLEAESSVDAVTARMDVERLLNELPE 120

Query: 130 KQARMIRAIRLEGLSVAEAASAEGIGESDVKVSVHRGLKALMARVHGAV 178
           +Q  +IR ++LEG S+AEAA   G  E   +V +HR LK L A++ G +
Sbjct: 121 RQRDLIRRVKLEGQSIAEAAEKSGQTELAARVGIHRTLKVLAAKLRGDI 169