Pairwise Alignments

Query, 929 a.a., Ribosome-associated ATPase RbbA from Sphingobium sp. HT1-2

Subject, 913 a.a., ABC-type multidrug transport system, permease component from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  901 bits (2329), Expect = 0.0
 Identities = 467/916 (50%), Positives = 634/916 (69%), Gaps = 18/916 (1%)

Query: 14  RIESLSHRYGGIIALNEVSLSLPKGKTTALVGPDGVGKSTLLGLISGVKKLQTGRLSVLG 73
           ++E +S  YG  +ALN ++L +P      L+GPDGVGKS+LL LISG + ++ G + VLG
Sbjct: 14  QLEGVSQHYGKTVALNNITLDIPARSMVGLIGPDGVGKSSLLSLISGARVIEQGNVIVLG 73

Query: 74  FDLTERRKREEFLSRVAYMPQGLGRNLYPTLSVRENIDFFGRLFGLSAVEREAHMRRLLD 133
            D+ + + R +   R+A+MPQGLG+NLY TLSV EN+DFF RLFG    EREA +  LL+
Sbjct: 74  GDMRDAKHRRDVCPRIAWMPQGLGKNLYHTLSVYENVDFFARLFGHDKAEREARITELLN 133

Query: 134 ATGLAPFPDRPAGKLSGGMKQKLGLCCSLVHDPDLLILDEPTTGVDPLSRRQFWELVDAM 193
           +TGLAPF DRPAGKLSGGMKQKLGLCC+L++DP+LLILDEPTTGVDPLSR QFW+L+D++
Sbjct: 134 STGLAPFRDRPAGKLSGGMKQKLGLCCALIYDPELLILDEPTTGVDPLSRAQFWDLIDSI 193

Query: 194 CAERPDMTVLVSTAYMEEAERFGHLVAMDDGKVIAQGDTREIMRDAGADTLEAAYVRLLP 253
              + +M+VLV+TAYMEEAERF  LVAM+ G+++A G  +++     + TLE A++ LLP
Sbjct: 194 RQRQTNMSVLVATAYMEEAERFDWLVAMNAGEILATGSAQQLRAKTHSATLEQAFIALLP 253

Query: 254 QDKRPSGDALVVPAWQDKGEAPAIEAHDLTRRFGDFVAVDHVSFRIGRGEIFGFLGSNGC 313
           + +R +   +V+P +  + E  AIEA DLT RFG FVAVDHV+FRI RGEIFGFLGSNGC
Sbjct: 254 EAQRQAHKPVVIPPYHAEQEEIAIEAKDLTMRFGKFVAVDHVNFRIPRGEIFGFLGSNGC 313

Query: 314 GKTTTMKMLTGLLDATDGTASLFGRPIAPGDMETRMRVGYMSQAFSLYEELSVRQNLVLH 373
           GK+TTMKMLTGLL A++G A LFG+P+ P D++TR RVGYMSQAFSLY EL+VRQNL LH
Sbjct: 314 GKSTTMKMLTGLLPASEGQAWLFGQPVDPNDIDTRRRVGYMSQAFSLYNELTVRQNLELH 373

Query: 374 ARLYRVPRQQAGELVSAALAQFELEAHADAVPAALPLGIRQRLQLAAACLHRPEILILDE 433
           ARL+ +P  +    V+  + +F L    D +PA+LPLGIRQRL LA A +HRPE+LILDE
Sbjct: 374 ARLFHIPPAEIPARVAQMIERFMLTEVEDTLPASLPLGIRQRLSLAVAVIHRPEMLILDE 433

Query: 434 PTSGVDPAARDMFWRHLIRLSRDEGVTIFVSTHFMNEAERCDRISLMHRGRVLTVGAPTE 493
           PTSGVDP ARDMFW+ ++ LSR + VTIF+STHFMNEAERCDR+SLMH G+VL  G P E
Sbjct: 434 PTSGVDPVARDMFWQLMVDLSRQDKVTIFISTHFMNEAERCDRMSLMHAGKVLASGTPQE 493

Query: 494 LTQRYDAQRLEDAFIAVLEKDNDEAPTASAHLPVDASVASSTPAAGARSTAPGRPRLPTA 553
           L Q+  A  LE AFI+ L+    EA  A+   P+     S TPAA  +         P+ 
Sbjct: 494 LVQQRGAANLEAAFISWLQ----EAAGAAPETPIP---PSQTPAASGK---------PSR 537

Query: 554 AGSWPGFAWAFARREATELMRDRIRLAFALIGPIILLCIAAYSISFDVQNIRLAVLDHDR 613
            G      ++++RREA EL RD +R   AL+G +IL+ I  Y IS DV+N+R AVLD D+
Sbjct: 538 QGLSFRRLFSYSRREALELRRDPVRSTLALLGTVILMLIMGYGISMDVENLRFAVLDRDQ 597

Query: 614 SAASRDLQLYFEGSRYFRVEPELASDAAADQALREASTKMVLDIPPGFGRDLTAGRRPAV 673
           + +S+   L   GSRYF  +P LAS    D+ +R     + ++IPP FGRD+  G    +
Sbjct: 598 TVSSQAWSLNLAGSRYFIEQPPLASYDELDRRMRSGELAVAIEIPPNFGRDIARGTPAQI 657

Query: 674 DVRIDGASPFPASNARAYAEAVLLRYAMDQLRSAQPFAVPDLS-STIEPRFIYNQEFRSI 732
            V +DGA P  A   + Y +A+   + + +  S QP  V  +    IE R+ YN + +S+
Sbjct: 658 GVWVDGAMPSRAETVKGYVQAMHQSW-LQEAASRQPNPVKQVGLLNIETRYRYNPDVKSL 716

Query: 733 YAMAPGVLMLCMILIPAMLTALGVVREKEIGSITNLYASPASLGAFLVGKQMPYALLAMI 792
            A+ P V+ L +++IP+ML+AL VVREKE+GS+ NLY +P +   FL+GKQ+PY  L M+
Sbjct: 717 PAIVPAVIPLLLMMIPSMLSALSVVREKELGSMINLYVTPTTRSEFLLGKQLPYIALGML 776

Query: 793 SFVTLILVTVFILGVPLKGSLPALLIGGFLFILSVTGLGLMISAFVRSQVAAIFATSLIC 852
           +F+ L  ++VF+ GVPLKGS   L +   L+++  TGLGL+IS F++SQ+AAIF TS+I 
Sbjct: 777 NFLLLCALSVFVFGVPLKGSFLTLTLAALLYVIIATGLGLLISTFMKSQIAAIFGTSIIT 836

Query: 853 LIPSVNFSGLLYPVSTLTGPSHIIGLTFPSSWFQIVSLGTFTKGLGMASFGQAYLALMAL 912
           LIP+  FSG++ PV++L GP   IG  +P+S F  ++ GTF+K L ++     ++ L+  
Sbjct: 837 LIPATQFSGMIDPVASLEGPGRWIGEIYPTSHFLTIARGTFSKALDLSDLWPLFMPLLIA 896

Query: 913 AFLFVGGARLMLGKQE 928
             + +G + L+L KQE
Sbjct: 897 VPVVMGLSILLLKKQE 912



 Score =  152 bits (384), Expect = 9e-41
 Identities = 89/273 (32%), Positives = 154/273 (56%), Gaps = 16/273 (5%)

Query: 1   MIPPAQILPEE-AIRIESLSHRYGGIIALNEVSLSLPKGKTTALVGPDGVGKSTLLGLIS 59
           +IPP     EE AI  + L+ R+G  +A++ V+  +P+G+    +G +G GKST + +++
Sbjct: 264 VIPPYHAEQEEIAIEAKDLTMRFGKFVAVDHVNFRIPRGEIFGFLGSNGCGKSTTMKMLT 323

Query: 60  GVKKLQTGRLSVLG-----FDLTERRKREEFLSRVAYMPQGLGRNLYPTLSVRENIDFFG 114
           G+     G+  + G      D+  RR       RV YM Q    +LY  L+VR+N++   
Sbjct: 324 GLLPASEGQAWLFGQPVDPNDIDTRR-------RVGYMSQAF--SLYNELTVRQNLELHA 374

Query: 115 RLFGLSAVEREAHMRRLLDATGLAPFPDRPAGKLSGGMKQKLGLCCSLVHDPDLLILDEP 174
           RLF +   E  A + ++++   L    D     L  G++Q+L L  +++H P++LILDEP
Sbjct: 375 RLFHIPPAEIPARVAQMIERFMLTEVEDTLPASLPLGIRQRLSLAVAVIHRPEMLILDEP 434

Query: 175 TTGVDPLSRRQFWELVDAMCAERPDMTVLVSTAYMEEAERFGHLVAMDDGKVIAQGDTRE 234
           T+GVDP++R  FW+L+  + + +  +T+ +ST +M EAER   +  M  GKV+A G  +E
Sbjct: 435 TSGVDPVARDMFWQLMVDL-SRQDKVTIFISTHFMNEAERCDRMSLMHAGKVLASGTPQE 493

Query: 235 IMRDAGADTLEAAYVRLLPQDKRPSGDALVVPA 267
           +++  GA  LEAA++  L +    + +  + P+
Sbjct: 494 LVQQRGAANLEAAFISWLQEAAGAAPETPIPPS 526