Pairwise Alignments

Query, 929 a.a., Ribosome-associated ATPase RbbA from Sphingobium sp. HT1-2

Subject, 578 a.a., LPS export ABC transporter ATP-binding protein from Escherichia coli ECRC62

 Score =  335 bits (859), Expect = 5e-96
 Identities = 215/574 (37%), Positives = 308/574 (53%), Gaps = 80/574 (13%)

Query: 10  EEAIRIESLSHRYGGII--ALNEVSLSLPKGKTTALVGPDGVGKSTLLGLISGVKKLQTG 67
           +  I +  L  R+ G+   A+  +  ++  G  T LVGPDG GK+TL+ +++G+ K  +G
Sbjct: 3   DAVITLNGLEKRFPGMDKPAVAPLDCTIHAGYVTGLVGPDGAGKTTLMRMLAGLLKPDSG 62

Query: 68  RLSVLGFDLTERRKREEFLSRV-AYMPQGLGRNLYPTLSVRENIDFFGRLFGLSAVEREA 126
             +V+GFD     K +  L  V  YMPQ  G  LY  L+V EN++ +  L  ++   R+ 
Sbjct: 63  NATVIGFDPI---KNDGALHAVLGYMPQKFG--LYEDLTVMENLNLYADLRSVTGEARKQ 117

Query: 127 HMRRLLDATGLAPFPDRPAGKLSGGMKQKLGLCCSLVHDPDLLILDEPTTGVDPLSRRQF 186
              RLL+ T L PF  R AGKLSGGMKQKLGL C+LV +P +L+LDEP  GVDP+SRR+ 
Sbjct: 118 TFARLLEFTSLGPFTGRLAGKLSGGMKQKLGLACTLVGEPKVLLLDEPGVGVDPISRREL 177

Query: 187 WELVDAMCAERPDMTVLVSTAYMEEAERF--------GHLVAMDDGKVIAQ--------- 229
           W++V  +  E   M +L ST+Y++EAE+         G L+   + K + Q         
Sbjct: 178 WQMVHELAGE--GMLILWSTSYLDEAEQCRDVLLMNEGELLYQGEPKALTQTMAGRSFLM 235

Query: 230 -----GDTREIMR-----DAGADTLEAAYVRLLPQDKRPSGDAL------------VVPA 267
                G+ + + R           ++   VRL+ + +    D                P 
Sbjct: 236 TSPHEGNRKLLQRALKLPQVSDGMIQGKSVRLILKKEATPDDIRHAEGMPEININETTPR 295

Query: 268 WQDK----------GEAP---------------AIEAHDLTRRFGDFVAVDHVSFRIGRG 302
           ++D            E+P                IEA +LT++FGDF A DHV+F + RG
Sbjct: 296 FEDAFIDLLGGAGTSESPLGAILHTVEGTPGETVIEAKELTKKFGDFAATDHVNFAVKRG 355

Query: 303 EIFGFLGSNGCGKTTTMKMLTGLLDATDGTASLFGRPIAPGDMETRMRVGYMSQAFSLYE 362
           EIFG LG NG GK+TT KM+ GLL  T G A + G  +     + R  +GYM+Q FSLY 
Sbjct: 356 EIFGLLGPNGAGKSTTFKMMCGLLVPTSGQALVLGMDLKESSGKARQHLGYMAQKFSLYG 415

Query: 363 ELSVRQNLVLHARLYRVPRQQAGELVSAALAQFELEAHADAVPAALPLGIRQRLQLAAAC 422
            L+V QNL   + +Y +  +   E +S     F L++ A      LPLG +QRL LA + 
Sbjct: 416 NLTVEQNLRFFSGVYGLRGRAQNEKISRMSEAFGLKSIASHATDELPLGFKQRLALACSL 475

Query: 423 LHRPEILILDEPTSGVDPAARDMFWRHLIRLSRDEGVTIFVSTHFMNEAERCDRISLMHR 482
           +H P+IL LDEPTSGVDP  R  FW H I    ++GVT+ V+THFM+EAE CDRI L++R
Sbjct: 476 MHEPDILFLDEPTSGVDPLTRREFWLH-INSMVEKGVTVMVTTHFMDEAEYCDRIGLVYR 534

Query: 483 GRVLTVGAPTELTQR--YDAQ---RLEDAFIAVL 511
           G+++  G P +L  +   D Q    +E AFI ++
Sbjct: 535 GKLIASGTPDDLKAQSANDEQPDPTMEQAFIQLI 568



 Score =  150 bits (380), Expect = 2e-40
 Identities = 88/258 (34%), Positives = 146/258 (56%), Gaps = 12/258 (4%)

Query: 10  EEAIRIESLSHRYGGIIALNEVSLSLPKGKTTALVGPDGVGKSTLLGLISGVKKLQTGRL 69
           E  I  + L+ ++G   A + V+ ++ +G+   L+GP+G GKST   ++ G+    +G+ 
Sbjct: 327 ETVIEAKELTKKFGDFAATDHVNFAVKRGEIFGLLGPNGAGKSTTFKMMCGLLVPTSGQA 386

Query: 70  SVLGFDLTERRKREEFLSRVAYMPQGLGRNLYPTLSVRENIDFFGRLFGLSAVEREAHMR 129
            VLG DL E   +      + YM Q    +LY  L+V +N+ FF  ++GL    +   + 
Sbjct: 387 LVLGMDLKESSGKAR--QHLGYMAQKF--SLYGNLTVEQNLRFFSGVYGLRGRAQNEKIS 442

Query: 130 RLLDATGLAPFPDRPAGKLSGGMKQKLGLCCSLVHDPDLLILDEPTTGVDPLSRRQFWEL 189
           R+ +A GL         +L  G KQ+L L CSL+H+PD+L LDEPT+GVDPL+RR+FW  
Sbjct: 443 RMSEAFGLKSIASHATDELPLGFKQRLALACSLMHEPDILFLDEPTSGVDPLTRREFWLH 502

Query: 190 VDAMCAERPDMTVLVSTAYMEEAERFGHLVAMDDGKVIAQGDTREIMRDAGAD-----TL 244
           +++M  +   +TV+V+T +M+EAE    +  +  GK+IA G   ++   +  D     T+
Sbjct: 503 INSMVEK--GVTVMVTTHFMDEAEYCDRIGLVYRGKLIASGTPDDLKAQSANDEQPDPTM 560

Query: 245 EAAYVRLLPQ-DKRPSGD 261
           E A+++L+   DK  S +
Sbjct: 561 EQAFIQLIHDWDKEHSNE 578