Pairwise Alignments

Query, 375 a.a., Inner membrane transport permease YhhJ from Sphingobium sp. HT1-2

Subject, 906 a.a., ribosome-associated ATPase from Pseudomonas putida KT2440

 Score = 96.3 bits (238), Expect = 3e-24
 Identities = 86/373 (23%), Positives = 158/373 (42%), Gaps = 13/373 (3%)

Query: 3   RWILNVALLSGKELRSVMKDVTLMALILFAFTVAIQLVANGVRAEVMNASVAIMDEDHSE 62
           R +L VA+  GKEL   ++D   +A  L      + +   G+  +V N + A+ D+D S 
Sbjct: 536 RRLLAVAVREGKEL---LRDKVRLAFALLGAVFMMVIFGYGISLDVENLAFAVHDQDQSP 592

Query: 63  LSRRLRDAIQ-QPYFKPPEDI-ERSAIGPAMNSGKYIFVIEIPPRFEADTLAGRSPSVQI 120
            SR   +A +   YF     I + S +   +   +    +EIPP F  D  AGR P V  
Sbjct: 593 QSRAYLEAFRGSRYFAEQAPIRDSSELHQRLQRSEIKLALEIPPGFGRDLYAGRQPVVAA 652

Query: 121 LVDATAMTQAGLGAAYFQQIFAQETLDFLHARGLLEAL--PVQVESRMHFNPNAQS--AW 176
            +D     +A     Y + +          A    +    PV++E+R  +N +  S  A 
Sbjct: 653 WLDGGMPFRAETSRNYVEAVHQANLEQLAKASPQPQPRQDPVRLETRFRYNQDVVSVNAI 712

Query: 177 YTSVMQIVTNVTVLSIILVGAAVIREREHSTIEHLLVMPVRASEIAFAKILANGLVILLA 236
              VM ++  +  +  +L    ++RE+E  +I +    P+   E    K +   L + L 
Sbjct: 713 GPGVMALI--LAFIPAMLTALGIVREKELGSITNFYATPLTRLEFLLGKQMPY-LAVSLV 769

Query: 237 SIASLWFVVHGVLGVPLTGSLLLFTAAMFLYLFSVTSLGMWMATLAPSMPQFGLFAVPVY 296
           ++A L  +   +  VPL GS+L        YL + TSLG+ ++    +     L  + + 
Sbjct: 770 NLALLVAMNRWLFAVPLKGSVLALACGGVAYLLATTSLGLLISAFTRTQIAAILGTMIIT 829

Query: 297 AIAYL-LSGAATPLESMPSAIRTIALCLPTTQFVSLSQAILYRGAGVRTILPELAIICGS 355
           ++  +  SG   P  S+  A   +    P   F+ ++     +  G+R + P+  I+   
Sbjct: 830 SLPTIQFSGLIVPRSSLDGAAAVMGQLFPAGYFLDIAVGTFTKALGLRELWPQCLILLSF 889

Query: 356 GVFFVAMAVSRFR 368
              F  ++++  +
Sbjct: 890 FAAFTGLSLAMLK 902