Pairwise Alignments

Query, 375 a.a., Inner membrane transport permease YhhJ from Sphingobium sp. HT1-2

Subject, 913 a.a., ABC-type multidrug transport system, permease component from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 94.7 bits (234), Expect = 9e-24
 Identities = 88/351 (25%), Positives = 150/351 (42%), Gaps = 26/351 (7%)

Query: 12  SGKELRSVMKDVTLMALILFAFTVAIQLVANGVRAEVMNASVAIMDEDHSELSRRL---- 67
           S +E   + +D     L L    + + ++  G+  +V N   A++D D +  S+      
Sbjct: 549 SRREALELRRDPVRSTLALLGTVILMLIMGYGISMDVENLRFAVLDRDQTVSSQAWSLNL 608

Query: 68  ---RDAIQQPYFKPPEDIERSAIGPAMNSGKYIFVIEIPPRFEADTLAGRSPSVQILVDA 124
              R  I+QP     ++++R      M SG+    IEIPP F  D   G    + + VD 
Sbjct: 609 AGSRYFIEQPPLASYDELDRR-----MRSGELAVAIEIPPNFGRDIARGTPAQIGVWVDG 663

Query: 125 TAMTQAGLGAAYFQ---QIFAQETLDFLHARGLLEALPVQVESRMHFNPNAQSAWYTSVM 181
              ++A     Y Q   Q + QE         + +   + +E+R  +NP+ +S       
Sbjct: 664 AMPSRAETVKGYVQAMHQSWLQEAAS-RQPNPVKQVGLLNIETRYRYNPDVKSLPAIVPA 722

Query: 182 QIVTNVTVLSIILVGAAVIREREHSTIEHLLVMPVRASEIAFAKIL---ANGLVILLASI 238
            I   + ++  +L   +V+RE+E  ++ +L V P   SE    K L   A G++  L   
Sbjct: 723 VIPLLLMMIPSMLSALSVVREKELGSMINLYVTPTTRSEFLLGKQLPYIALGMLNFLLLC 782

Query: 239 ASLWFVVHGVLGVPLTGSLLLFTAAMFLYLFSVTSLGMWMATLAPSMPQFGLFAVPVYAI 298
           A   FV     GVPL GS L  T A  LY+   T LG+ ++T   S     +F   +  +
Sbjct: 783 ALSVFV----FGVPLKGSFLTLTLAALLYVIIATGLGLLISTFMKSQIA-AIFGTSIITL 837

Query: 299 --AYLLSGAATPLESMPSAIRTIALCLPTTQFVSLSQAILYRGAGVRTILP 347
             A   SG   P+ S+    R I    PT+ F+++++    +   +  + P
Sbjct: 838 IPATQFSGMIDPVASLEGPGRWIGEIYPTSHFLTIARGTFSKALDLSDLWP 888