Pairwise Alignments

Query, 188 a.a., sigma-24 (FecI-like) protein from Sphingobium sp. HT1-2

Subject, 169 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score = 53.1 bits (126), Expect = 3e-12
 Identities = 39/151 (25%), Positives = 70/151 (46%), Gaps = 7/151 (4%)

Query: 28  LVRRHQGWVHRLVRSHVGSPDEALDVTQASFVAAFSALSRYDGTRPFPVWMSRIVINKCH 87
           L R H GW+   +R  +G  + A DV Q +F+    +  R+ G +    ++++I  N   
Sbjct: 14  LYRDHHGWLQGWLRRRLGDREHAADVAQDTFLRLLVS-GRFPGDKESRSYLAQIARNLVI 72

Query: 88  D-WRRRRAVRNFFSFALPLGEAEHIVDDAPSADRALDAEQQLAEAMTAIAALPASLKDTL 146
           D WRR R  R +      L E E     +PS +      + L +    +  +P +++   
Sbjct: 73  DQWRRLRIERAYLESIAHLPEPE-----SPSLETRALILETLMQIDAMLDRMPDNVRQAF 127

Query: 147 ILRTIDEKSEAETAEILGISQKAVETRLYRA 177
           +L   +  S A+ AE LG++  +V+  + RA
Sbjct: 128 LLSQFEGLSYAQIAERLGVTVSSVQKYMTRA 158