Pairwise Alignments

Query, 175 a.a., RNA polymerase, sigma-24 subunit, ECF subfamily from Sphingobium sp. HT1-2

Subject, 160 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score = 74.7 bits (182), Expect = 7e-19
 Identities = 51/149 (34%), Positives = 78/149 (52%), Gaps = 10/149 (6%)

Query: 23  FLIARVGDAAEADDLLQELWVRARNVAAG-PIGNGRAYLYKMAQNLVLDRLREQQRRMAR 81
           FL A++G+   A+D++ + +VR    ++  PI   RA+LY+ A NLV+D  R    R   
Sbjct: 12  FLNAKLGNRQVAEDVVHDAYVRVLERSSDTPIEQPRAFLYRTALNLVIDGHRRNALRQVE 71

Query: 82  ERRWNDQETDFTAPGIDPVDRSQTAEDQIIAREEVQRIKTALETLPEGARRAFELHKLRG 141
                D E  F +          T  D     + ++ ++ AL  LP   R +F L KL G
Sbjct: 72  PLDVLDAEERFASSS------PHTHHDH---GQRLELLERALAELPPACRDSFLLRKLEG 122

Query: 142 LTHGEVAAQLGISKSGVEKHMAVAMKYLR 170
           LTH ++A +L IS++ VEKH+  AMK+ R
Sbjct: 123 LTHLQIAERLSISRAMVEKHIVNAMKHCR 151