Pairwise Alignments

Query, 175 a.a., RNA polymerase, sigma-24 subunit, ECF subfamily from Sphingobium sp. HT1-2

Subject, 191 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 74.3 bits (181), Expect = 1e-18
 Identities = 46/164 (28%), Positives = 79/164 (48%), Gaps = 9/164 (5%)

Query: 12  IYGVHRADLRRFLIARVGDAAEADDLLQELWVRARNVAAGPIGNGRAYLYKMAQNLVLDR 71
           ++   RA +   +  RVG  A A DL+QEL++R        +     YL + A NL +D 
Sbjct: 24  VFQAQRARMEALVSRRVGCRATASDLVQELFLRFWRRPEVKVEALDTYLLRCAGNLAIDH 83

Query: 72  LREQQRRMARERRWNDQETDFTAPGIDPVDRSQTAEDQIIAREEVQRIKTALETLPEGAR 131
           LR +  R         +     A  +     +Q  E  +    ++QRI+  L  LPE  R
Sbjct: 84  LRSESSR---------ERVAEAAVPVSEASLAQAPEQAVEVDHDLQRIEATLRALPERTR 134

Query: 132 RAFELHKLRGLTHGEVAAQLGISKSGVEKHMAVAMKYLRRALTD 175
           + F L+++ G  + E+A  + +S+S VEKHM  A++  + ++ +
Sbjct: 135 QIFLLNRIHGCKYSEIAKAMQLSQSAVEKHMMRALEACKASVAE 178