Pairwise Alignments

Query, 175 a.a., RNA polymerase, sigma-24 subunit, ECF subfamily from Sphingobium sp. HT1-2

Subject, 374 a.a., putative RNA polymerase sigma-70 factor, ECF subfamily/transmembrane sensor protein from Pseudomonas putida KT2440

 Score = 88.2 bits (217), Expect = 1e-22
 Identities = 58/175 (33%), Positives = 97/175 (55%), Gaps = 10/175 (5%)

Query: 1   MSLSDDSDLELIYGVHRADLRRFLIARVGDAAEADDLLQELWVRARNV--AAGPIGNGRA 58
           M  S  S L   +  H  DL +FL  R+ D   A D+ QE +++  N+   A P+ + R+
Sbjct: 1   MLTSPMSGLLASFQEHYDDLLQFLTRRMSDRQRAADVAQETYLKLVNIDEQAVPVLHARS 60

Query: 59  YLYKMAQNLVLDRLREQQRRMARERRWNDQETDFTAPGIDPVDRSQTAEDQIIAREEVQR 118
           +++++A NL +D LR +QR +A     +D   +   P   P       E  ++ARE +Q 
Sbjct: 61  FIFRVAGNLAIDALRREQR-IAASHDDSDGACEVACPAPAP-------EAALLARERLQI 112

Query: 119 IKTALETLPEGARRAFELHKLRGLTHGEVAAQLGISKSGVEKHMAVAMKYLRRAL 173
           +  AL  LP+ AR+A  L+++ GLT  +VA +LG+S+S V K++  A+++ R  L
Sbjct: 113 LDQALLQLPDNARQALLLNRVEGLTQKQVAQRLGVSESMVAKYIGQALRHCRGRL 167