Pairwise Alignments

Query, 175 a.a., RNA polymerase, sigma-24 subunit, ECF subfamily from Sphingobium sp. HT1-2

Subject, 171 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 75.5 bits (184), Expect = 5e-19
 Identities = 53/161 (32%), Positives = 89/161 (55%), Gaps = 11/161 (6%)

Query: 7   SDLELIYGVHRADLRRFLIARVGDAAEADDLLQELWVRA-RNVAAGPIGNGRAYLYKMAQ 65
           +++ L+Y  H   LR +L +RVG +  A DL Q+ +VR  R     P+   RAYL  +A+
Sbjct: 10  TEVALLYQSHHTWLRGWLRSRVGCSEHAADLAQDTFVRLLRARQMSPLKEPRAYLSSIAR 69

Query: 66  NLVLDRLREQQRRMARERRWNDQETDFTAPGIDPVDRSQTAEDQIIAREEVQRIKTALET 125
            L++D    Q RR A ER + +           P     + ED+++  + ++R+  AL+ 
Sbjct: 70  GLMID----QFRRRALERAYQEGLAHL------PEAEVPSEEDKLVILDSLERLDRALQQ 119

Query: 126 LPEGARRAFELHKLRGLTHGEVAAQLGISKSGVEKHMAVAM 166
           L    R+AF L +L GL+  +VA +LG+S++ VE+ +A A+
Sbjct: 120 LKPRVRQAFLLAQLDGLSIVQVAQRLGVSRATVERDLAKAL 160