Pairwise Alignments

Query, 175 a.a., RNA polymerase, sigma-24 subunit, ECF subfamily from Sphingobium sp. HT1-2

Subject, 192 a.a., RNA polymerase sigma-70 factor, Bacteroides expansion family 1 from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 60.8 bits (146), Expect = 1e-14
 Identities = 42/175 (24%), Positives = 85/175 (48%), Gaps = 15/175 (8%)

Query: 6   DSDLELIYGVHRADLRRFLIARVGDAAEADDLLQE----LWVRARNVAAGPIGNGRAYLY 61
           D   EL++ ++   L       +    +A++++Q+    LW R RN+ A       +YL+
Sbjct: 22  DKAFELLFKLYYDKLLHLAKYYLNSTEDAEEIVQDVFIKLWERRRNITA----LNNSYLF 77

Query: 62  KMAQNLVLDRLREQQRRMARERRWNDQETDFTAPGIDPVDRSQTAEDQIIAREEV-QRIK 120
            + +N  LD L+ +     + +   +++        DP+   Q     +I  +E+ ++I+
Sbjct: 78  TITKNACLDHLKHRSVVQKKSKEHYERQL------ADPLRFIQNETASLILEKELDEKIQ 131

Query: 121 TALETLPEGARRAFELHKLRGLTHGEVAAQLGISKSGVEKHMAVAMKYLRRALTD 175
            ++  LP+  R  F   +L G  + E+A +L ISK  V+ H+ +A+K +R  L +
Sbjct: 132 ESIAALPDKQREVFTKSRLEGKKNMEIAQELKISKRTVDTHITLALKAMRLQLKE 186