Pairwise Alignments

Query, 220 a.a., RNA polymerase ECF-type sigma factor from Sphingobium sp. HT1-2

Subject, 173 a.a., putative ECF sigma factor PrtI from Pseudomonas putida KT2440

 Score = 85.5 bits (210), Expect = 6e-22
 Identities = 57/158 (36%), Positives = 79/158 (50%), Gaps = 17/158 (10%)

Query: 26  VLPQLRAFARSLAGNRDTADDLVQETMLKAWRARERYVAGTNFRAWAFVILRNHFLSEMR 85
           +L +LR FA  L     +ADDLVQ T+ +A   R++       RAW F IL   FL   R
Sbjct: 12  LLARLRRFAVWLTREPGSADDLVQATVERALSRRDQQRDADALRAWLFTILYRQFLDGKR 71

Query: 86  RRRFVGEW----------DELVADRVLAAPADQEKSVELRDMMRALMQLPVPQREALILV 135
           R R    W          DE V D +       E  V  +  ++A  +L   QR  L+LV
Sbjct: 72  RERLHARWLSWFGRNEHDDEPVGDNL-------ETIVLAQADLQAFARLTAEQRALLLLV 124

Query: 136 GAGGISYEETAEIIGVAVGTIKSRVARARVALEALLNG 173
              G+SY+E A+ +G+ +GT+ SR++RAR AL  L  G
Sbjct: 125 SIEGLSYKEAAQALGIPIGTVMSRLSRARNALRELTEG 162