Pairwise Alignments

Query, 220 a.a., RNA polymerase ECF-type sigma factor from Sphingobium sp. HT1-2

Subject, 178 a.a., putative RNA polymerase sigma factor from Pseudomonas putida KT2440

 Score = 66.6 bits (161), Expect = 3e-16
 Identities = 48/155 (30%), Positives = 71/155 (45%), Gaps = 2/155 (1%)

Query: 23  LAAVLPQLRAFARSLAGNRDTA-DDLVQETMLKAWRARERYVAGTNFRAWAFVILRNHFL 81
           L  +   +RAF RS    R    +D+VQ+ +L    AR  Y       AW   I R    
Sbjct: 20  LGTLALHVRAFLRSRLSRRPAEIEDMVQDVLLAVHNARHTYQPQQPLTAWVQAIARYKLA 79

Query: 82  SEMRR-RRFVGEWDELVADRVLAAPADQEKSVELRDMMRALMQLPVPQREALILVGAGGI 140
             +R   R     D L  D  L A ++ E +   RD+ + L QLP  QR  ++ V   G+
Sbjct: 80  DHLRSVSRRDARHDVLDDDAQLFAVSEVESAEASRDLTKLLKQLPERQRLPIVHVKLEGL 139

Query: 141 SYEETAEIIGVAVGTIKSRVARARVALEALLNGGS 175
           S EETA++ G++   +K  + R   AL  L+ G +
Sbjct: 140 SVEETAQLTGLSSSAVKVGIHRGLKALSRLIGGAN 174