Pairwise Alignments

Query, 220 a.a., RNA polymerase ECF-type sigma factor from Sphingobium sp. HT1-2

Subject, 168 a.a., hypothetical protein from Magnetospirillum magneticum AMB-1

 Score =  105 bits (262), Expect = 5e-28
 Identities = 61/165 (36%), Positives = 97/165 (58%), Gaps = 3/165 (1%)

Query: 20  KAQLAAVLPQLRAFARSLAGNRDTADDLVQETMLKAWRARERYVAGTNFRAWAFVILRNH 79
           ++Q+ A +P LR +AR+L+G+   ADDLVQ+ + +A      +   +N RAW F ILR+ 
Sbjct: 5   ESQIEAEIPGLRRYARALSGDVTQADDLVQDCLERALSRLALWRRDSNLRAWLFTILRHV 64

Query: 80  FLSEMRRKRFVGEWDEL--VADRVLAAPADQEKSVELRDMMRALMQLPVPQREALILVGA 137
           ++ E+RR++   E   +    D   AAP+  ++ + +RD++ AL  L   QRE ++LVG 
Sbjct: 65  WIDELRRRKVRPEHGGMDDAMDSAAAAPSQMDR-LAVRDLVAALALLAPEQRETVLLVGL 123

Query: 138 GGISYEETAEIVGVAVGTIKSRVARARVALEQLLDGGNLENNRAE 182
            G++Y E A + GV VGT+ SR+ R R  L  L+ GG     R +
Sbjct: 124 EGLTYAEVAGVTGVPVGTVMSRLKRGRDRLALLMHGGEAALRRVK 168