Pairwise Alignments

Query, 886 a.a., Excinuclease ABC subunit A paralog of unknown function from Sphingobium sp. HT1-2

Subject, 838 a.a., putative excinuclease ABC subunit A from Pseudomonas putida KT2440

 Score = 1136 bits (2939), Expect = 0.0
 Identities = 570/869 (65%), Positives = 672/869 (77%), Gaps = 36/869 (4%)

Query: 18  TGPPACVQIRGARQNNLKNVDVDVPRNAFVVFTGISGSGKSSLAFGTLYAEAQRRYLESV 77
           T P   +++RGAR++NLKN+DVD+PR+A VVFTG+SGSGKSSLAF TLYAEAQRRY ESV
Sbjct: 6   TTPSGFIRVRGAREHNLKNIDVDIPRDALVVFTGVSGSGKSSLAFSTLYAEAQRRYFESV 65

Query: 78  APYARRLIDQAGVPEVDAIDGLPPAVALQQQRGSANARSSVGSVTTLSSLVRMLYSRVGE 137
           APYARRLIDQ GVP+VDAIDGLPPAVALQQQRG+ +ARSSVGSVTTLSS +RMLYSR G 
Sbjct: 66  APYARRLIDQVGVPDVDAIDGLPPAVALQQQRGTPSARSSVGSVTTLSSSIRMLYSRAGH 125

Query: 138 YPRHQPMLYAEDFSPNTVAGACPTCHGIGRVYDATEETMVPDDTLTIRERAVAAWPAAWH 197
           YP  Q MLYAEDFSPNT  GACP CHG+GRVY+ TE TMVPD +LTIRERAVAAWP AW 
Sbjct: 126 YPPGQAMLYAEDFSPNTPQGACPQCHGLGRVYEVTEATMVPDPSLTIRERAVAAWPMAWQ 185

Query: 198 GQNLRDILVSLGYNVDTPWRDLPKKDRDWILFTDEAPTVPVYAGLTPEQTRVALKRRMEP 257
           GQNLRDILV+LGY+VD PWRDLP+  RDWILFT+E PT PVYAGLTP QTR ALKR++EP
Sbjct: 186 GQNLRDILVTLGYDVDIPWRDLPQAQRDWILFTEETPTAPVYAGLTPAQTREALKRKLEP 245

Query: 258 SYQGTFTGARRYVLETFANTKSALMKKRVSQYIIGRDCPTCDGKRLKREALSVKFAGLDI 317
           SYQGTF GARRYVL TF +++SA M+KRV+QY+    CP C GKRLKREAL+V FAGLDI
Sbjct: 246 SYQGTFMGARRYVLHTFMHSQSAQMRKRVAQYMHPSTCPLCQGKRLKREALAVTFAGLDI 305

Query: 318 AEFGDLTVLKLRDLLTPVAHGEYGGAAAVPKSHVLGKAARDAAVERRVAAGGSAHKSAPD 377
           AE   L++  L ++   VA  +Y                                     
Sbjct: 306 AELSHLSLQALAEVFRKVAAADYL------------------------------------ 329

Query: 378 VRRTPNLSDEKRIAAQRLASELIERLEPLIDLGLGYISLDRSTPTLSSGELQRLRLATQL 437
            ++   L+ EKR+AAQR+A EL+ER++ L+DLGLGY++L+RSTPTLSSGELQRLRLATQL
Sbjct: 330 TQQQDELTLEKRLAAQRIAKELLERIDTLLDLGLGYLALERSTPTLSSGELQRLRLATQL 389

Query: 438 SSQLFGVVYVLDEPSAGLHPADGEALLTILERLKAAGNSLFVVEHDLDVIRRAEWLVDVG 497
           +SQLFGVVYVLDEPSAGLHPAD EAL   L+RLK AGNS++VVEHDLD +RRA+WLVDVG
Sbjct: 390 NSQLFGVVYVLDEPSAGLHPADSEALFEALQRLKQAGNSVYVVEHDLDTMRRADWLVDVG 449

Query: 498 PGAGEKGGEVLYSGPIEGLANVETSITRRYLFAEPLRSEHTPRDAKAWLRLEGIRRNNLH 557
           P AGE GG +LYSGP  GLA V+ S TR YLF  P+++   PR A+ WL+LEGI RNNL 
Sbjct: 450 PAAGEHGGTILYSGPPAGLAEVQQSCTRTYLFDAPVQATRAPRQARDWLKLEGITRNNLD 509

Query: 558 GLDVEFPIGCFTAVTGVSGSGKSSLVSQALPELVTEHLGGSPVAEEEDIDPLLDVAQNDT 617
            L   FP+GCFTAVTG+SGSGKSSLVSQAL ELV  HLG +    E +   L D  +  +
Sbjct: 510 NLSAAFPLGCFTAVTGISGSGKSSLVSQALLELVGAHLGHAEQRSEPEAQSLEDEPEQTS 569

Query: 618 EGRIVAGMEHVRRLVRVDQKPIGRTPRSNLSTYSGMFDHVRRIFADTPLARRRHYSPGRF 677
            G + AG+  ++RLV+VDQKPIGRTPRSNL+TY+G+FDHVR+ FA T  A+ + +  GRF
Sbjct: 570 SGHVSAGLGSIKRLVQVDQKPIGRTPRSNLATYTGLFDHVRKCFAATEQAKAQGFDAGRF 629

Query: 678 SFNVAQGRCPVCEGEGYVMVELLFLPSVFAPCSTCHGSRYNPQTLEVEWNGRNIAQVLEL 737
           SFNVA+GRC  CEGEG+V VELLF+PSV+APC TC G+RYNP+TL V W G NIAQVL+L
Sbjct: 630 SFNVAKGRCANCEGEGFVSVELLFMPSVYAPCPTCQGARYNPETLAVSWQGMNIAQVLQL 689

Query: 738 TVDDACDFFAGEASVMRSLDVLREIGLGYLRLGQPATELSGGEAQRIKLATELQRAQRGN 797
           TVD A   FA +    R L VL++IGLGYLRLGQPATELSGGEAQRIKLATELQR  RG 
Sbjct: 690 TVDQALQVFAEQPPARRCLQVLQDIGLGYLRLGQPATELSGGEAQRIKLATELQRMARGA 749

Query: 798 TIYILDEPTSGLHPSDGDRLMRHLRGLVEAGNTVVVVEHDMRAITQADWIIDLGPGAGED 857
           T+Y+LDEPT+GLHP D DRL+  L  LVE+G++VVVVEHDMR + Q+DW+ID+GPGAG+ 
Sbjct: 750 TLYVLDEPTNGLHPQDIDRLLVQLNRLVESGHSVVVVEHDMRVVAQSDWVIDIGPGAGDA 809

Query: 858 GGRIVASGVPGVVAEAEGSLTARYLKAAL 886
           GG++V SG P VVA    S TA +L  AL
Sbjct: 810 GGKVVVSGTPQVVAACTDSRTATFLAKAL 838



 Score = 60.8 bits (146), Expect = 3e-13
 Identities = 54/208 (25%), Positives = 86/208 (41%), Gaps = 28/208 (13%)

Query: 538 TPRDAKAWLRLEGIRRNNLHGLDVEFPIGCFTAVTGVSGSGKSSLVSQAL-PELVTEHLG 596
           +P     ++R+ G R +NL  +DV+ P       TGVSGSGKSSL    L  E    +  
Sbjct: 4   SPTTPSGFIRVRGAREHNLKNIDVDIPRDALVVFTGVSGSGKSSLAFSTLYAEAQRRYF- 62

Query: 597 GSPVAEEEDIDPLLDVAQNDTEGRIVAGMEHVRRLVRVDQKPIGRTPRSNLSTYSGMFDH 656
                  E + P      +      V  ++ +   V + Q+    + RS++ + + +   
Sbjct: 63  -------ESVAPYARRLIDQVGVPDVDAIDGLPPAVALQQQRGTPSARSSVGSVTTLSSS 115

Query: 657 VRRIFADTPLARRRHYSPGR-------FSFNVAQGRCPVCEGEG--YVMVELLFLPSVFA 707
           +R ++     +R  HY PG+       FS N  QG CP C G G  Y + E   +P    
Sbjct: 116 IRMLY-----SRAGHYPPGQAMLYAEDFSPNTPQGACPQCHGLGRVYEVTEATMVPD--- 167

Query: 708 PCSTCHGSRYNPQTLEVEWNGRNIAQVL 735
           P  T            + W G+N+  +L
Sbjct: 168 PSLTIRERAV--AAWPMAWQGQNLRDIL 193