Pairwise Alignments

Query, 905 a.a., hypothetical protein from Sphingobium sp. HT1-2

Subject, 899 a.a., Sensor histidine kinase RcsC from Xanthobacter sp. DMC5

 Score =  273 bits (698), Expect = 3e-77
 Identities = 160/381 (41%), Positives = 214/381 (56%), Gaps = 9/381 (2%)

Query: 364 EMAERRQAEAILAQSQKMETIGQLTGGVAHDFNNLLQVVSGNLQLLARDIAGNEKAETRV 423
           +M E+R  E   AQSQK++ +G L GGVAHDFNN+L  + G   LL      ++ +   +
Sbjct: 507 DMTEQRALEVQFAQSQKLQAVGHLAGGVAHDFNNVLTAIIGYCDLLLAKHRPSDPSFPDI 566

Query: 424 ANAMAGVTRGAKLAAQLLAFGRRQALEPKVVNVTRFVRDMDDMLRRAIGEGIEVETIVGG 483
                   R A L  QLLAF RRQ L P+V+ +   + D   +LRR IGE I ++     
Sbjct: 567 MQIKQNANRAAGLVRQLLAFSRRQTLRPQVIELGDVISDAAALLRRLIGERITLDVEHAR 626

Query: 484 GLWNTFVDPAQVENALLNLAINARDAMEGQGKLTIELGNASLDDEYARSHSEVAPGQYVM 543
            LW   VD  Q E  ++NLA+NARDAM   G LTI  GN       A     +  G YVM
Sbjct: 627 DLWPVKVDVNQFEQVIVNLAVNARDAMPDGGTLTIRTGNVPAAGCAAYGQG-LPEGDYVM 685

Query: 544 LAVTDTGSGIPPEIIEKVFDPFFSTKSEGKGSGLGLSMVYGFVKQSGGHVKIYSEVGEGT 603
           + V DTG+GIPP+I++K+F+PFFSTK  GKG+GLGLS VYG V+Q+GG +   SE+G GT
Sbjct: 686 VEVVDTGTGIPPDIMDKIFEPFFSTKEVGKGTGLGLSTVYGIVQQTGGTILADSEMGRGT 745

Query: 604 TIKLYFPRSV---ENED----LEVELDSGPIRGGSETVLVVEDDDAVRATVVEMLNDLGY 656
           T +++ PR V   E E+     E E  +G   G    VL+VED+DAVRA     L + GY
Sbjct: 746 TFRVFLPRHVAGTEEEEAPKPAEPEPKAGDTTGQGRRVLLVEDEDAVRAFASRALANRGY 805

Query: 657 GVLKAVDASSALSVIESGIQIDMLFTDVVMPGRLKSAELARMARERQPDIAVLFTSGYTE 716
            VL A     AL +IE   ++D++ +DVVMP  +    L R  R R+P + V+F SGY E
Sbjct: 806 EVLAAASGVEALELIEREGKVDLVISDVVMP-EMDGPTLLRELRSREPGLKVIFISGYAE 864

Query: 717 NSIVHGGRLDAGVELLSKPYS 737
            +             L KP+S
Sbjct: 865 EAFARNLPPSEHFSFLPKPFS 885



 Score = 51.6 bits (122), Expect = 2e-10
 Identities = 44/165 (26%), Positives = 72/165 (43%), Gaps = 8/165 (4%)

Query: 728 GVELLSKPYSRDALARKF--RHVLANQRQRNLARTMSARSAPDDKPERRNALALIVEDDA 785
           G  L      R    R F  RHV   + +           A D   + R  L  +VED+ 
Sbjct: 733 GTILADSEMGRGTTFRVFLPRHVAGTEEEEAPKPAEPEPKAGDTTGQGRRVL--LVEDED 790

Query: 786 IILANTAELVKDLGLTVIEALSAEDAVSALQTT-HVDVLITDANLPGMTGPDLAAIARQM 844
            + A  +  + + G  V+ A S  +A+  ++    VD++I+D  +P M GP L    R  
Sbjct: 791 AVRAFASRALANRGYEVLAAASGVEALELIEREGKVDLVISDVVMPEMDGPTLLRELRSR 850

Query: 845 LPHIGIIFATGDTQLDYDRSAPKT---VLLAKPYDGKALSQAIAE 886
            P + +IF +G  +  + R+ P +     L KP+  K L  A++E
Sbjct: 851 EPGLKVIFISGYAEEAFARNLPPSEHFSFLPKPFSLKQLVAAVSE 895



 Score = 27.3 bits (59), Expect = 0.004
 Identities = 18/60 (30%), Positives = 26/60 (43%)

Query: 246 EDWVGKPPSEVIGRHVRDVVGEKTYVARLPLIERAMAGEWVVADTTMPHRSGEDRAAEVR 305
           ED V    S  +     +V+   + V  L LIER    + V++D  MP   G     E+R
Sbjct: 789 EDAVRAFASRALANRGYEVLAAASGVEALELIEREGKVDLVISDVVMPEMDGPTLLRELR 848