Pairwise Alignments

Query, 377 a.a., RND efflux system, membrane fusion protein from Sphingobium sp. HT1-2

Subject, 391 a.a., Multidrug efflux RND membrane fusion protein from Pseudomonas putida KT2440

 Score =  272 bits (696), Expect = 1e-77
 Identities = 159/365 (43%), Positives = 223/365 (61%), Gaps = 9/365 (2%)

Query: 14  PIALCILIT----ACGQEKAP-KKGPV-EVGVVTLAAQNVTVSSELPARTVSTMQSEVRP 67
           P+AL  L++     C     P ++ P  +V V TL  Q + +SSEL  R ++   +EVR 
Sbjct: 11  PLALMALLSLSLAGCSDSAEPDEQAPTAQVRVETLQLQPLAISSELSGRILAPRTAEVRA 70

Query: 68  QITGVIQKRLFTEGSMVTAGQPLYQIDERLYRASRDEAQAALVSAQATAVAAQAKAQRYR 127
           ++ GV+ KR++ EGS V  G  L+ ID   ++A  D A+A L  A+AT   A+ + QRYR
Sbjct: 71  RVAGVVLKRVYREGSDVKQGDVLFLIDPAPFKADHDSARATLAKAEATRYQARLQEQRYR 130

Query: 128 GLGDTEAVSAQDRDDVIATARQAAAAVGQARASLDTANVNLTFTQVRAPISGRIGRTLFT 187
            L D +AVS Q+ D+  A+  QA A V +ARA+L+ A +NL +  V APISGRIGR   T
Sbjct: 131 ELVDDKAVSRQEYDNAKASFLQADAEVAEARAALERARLNLGYATVTAPISGRIGRAQVT 190

Query: 188 PGALVTASQTDPLTTIQQLDPIYVDVTQSSSQLLQLRRSLAAGKTL---PASATIRLKLD 244
            GALV  ++T PL TIQQLDPI+ DVTQS+ +L  LRR+L AG+        A   L  D
Sbjct: 191 EGALVGQNETTPLATIQQLDPIHADVTQSTRELNALRRALRAGELQQVGDGQARATLIQD 250

Query: 245 DGTEYPLEGRIEFAEPIVDVDSGTVTLRARFPNPDGMLLPGMFVRVVAPQSVVPGAILAP 304
           DG+ YPL G++ F++  VD  +  +TLR+ FPNPD  LLPG +VRV   Q+V P  +  P
Sbjct: 251 DGSAYPLPGKLLFSDISVDPSTNQITLRSEFPNPDLDLLPGSYVRVRLEQAVQPKGLSVP 310

Query: 305 QQGIARDAKGNATALVVTKDNKVERRTVTAAQAIGDKWLITAGLKAGDRLIVEGTDKVQP 364
           Q+ I RD+ G    LVV +  +V  R V    A GD+W+++ GL AG+R++VEG   V+ 
Sbjct: 311 QRAILRDSAGVPKVLVVDQHARVSDRQVVLGSAQGDRWIVSEGLAAGERVVVEGLQHVKA 370

Query: 365 DDKVK 369
            D+V+
Sbjct: 371 GDQVQ 375