Pairwise Alignments

Query, 377 a.a., RND efflux system, membrane fusion protein from Sphingobium sp. HT1-2

Subject, 397 a.a., efflux RND transporter periplasmic adaptor subunit from Dickeya dianthicola ME23

 Score =  336 bits (862), Expect = 6e-97
 Identities = 180/380 (47%), Positives = 250/380 (65%), Gaps = 12/380 (3%)

Query: 8   RSLRVAPIALCILI------TAC----GQEKAPKKGPVEVGVVTLAAQNVTVSSELPART 57
           ++ R+ P+A  +++      T C     Q  A + G  EVG++T+ +Q + + +ELP RT
Sbjct: 3   KNRRLTPLAAMLMLSGGLVLTGCDNKASQGGAQQGGAPEVGIITIKSQTLNIITELPGRT 62

Query: 58  VSTMQSEVRPQITGVIQKRLFTEGSMVTAGQPLYQIDERLYRASRDEAQAALVSAQATAV 117
            +   +EVRPQ+ G+I KR F EGS V AG  LYQID   Y+A  + A+AALV AQA A 
Sbjct: 63  SAYRIAEVRPQVNGIILKRNFVEGSDVKAGTSLYQIDPATYQAQYNNAKAALVQAQANAE 122

Query: 118 AAQAKAQRYRGLGDTEAVSAQDRDDVIATARQAAAAVGQARASLDTANVNLTFTQVRAPI 177
            AQ    RY+ L  T  VS QD D  +ATARQ  AAV  A+ASLD A ++L +T+V API
Sbjct: 123 IAQLTVNRYKPLLGTNYVSKQDYDQAVATARQTEAAVAAAKASLDNAQISLNYTRVTAPI 182

Query: 178 SGRIGRTLFTPGALVTASQTDPLTTIQQLDPIYVDVTQSSSQLLQLRRSLAAG--KTLPA 235
           +GR+G++  T GALV+ +Q   +TTIQQLDPIYVDVTQS++  L+L++ L +G  +    
Sbjct: 183 TGRVGKSTVTEGALVSNAQATAMTTIQQLDPIYVDVTQSTNDFLRLKKELESGTLQQTNG 242

Query: 236 SATIRLKLDDGTEYPLEGRIEFAEPIVDVDSGTVTLRARFPNPDGMLLPGMFVRVVAPQS 295
            A ++L LD GT Y   G +EF++  VD  +G++TLRA FPNPD  LLPGMFVR      
Sbjct: 243 KANVQLTLDSGTRYSQAGTLEFSDVTVDETTGSITLRAVFPNPDHNLLPGMFVRAQLDSG 302

Query: 296 VVPGAILAPQQGIARDAKGNATALVVTKDNKVERRTVTAAQAIGDKWLITAGLKAGDRLI 355
           V P AIL PQQG++R  +G+AT ++V + +KVE  ++T  QAIGDKWL+T+G+K+GDR+I
Sbjct: 303 VTPNAILVPQQGVSRTPRGDATVMLVGEGDKVEVHSITTGQAIGDKWLVTSGVKSGDRII 362

Query: 356 VEGTDKVQPDDKVKPVAVAA 375
           + G  K++P  +VK    AA
Sbjct: 363 LTGLQKIRPGMQVKAQEAAA 382