Pairwise Alignments

Query, 1053 a.a., RND efflux system, inner membrane transporter from Sphingobium sp. HT1-2

Subject, 1042 a.a., Multidrug resistance protein MexB from Pseudomonas putida KT2440

 Score = 1008 bits (2605), Expect = 0.0
 Identities = 533/1047 (50%), Positives = 718/1047 (68%), Gaps = 9/1047 (0%)

Query: 2    LSRFFIDRPIFAWVIAIGIMLAGLGGMLSLPVAQYPDIAPPGVGISATYPGASAETVETS 61
            + +FFIDRP+FAWV+A+ I+LAG   +  LPVAQYP++APP V I A YPGASA T++ S
Sbjct: 1    MPQFFIDRPVFAWVVALFILLAGALAIPQLPVAQYPNVAPPQVEIYAVYPGASAATMDES 60

Query: 62   VTQVIEQQLTGIDGLMYFSSSSTSTGQSRITVTFQKGTDPDTAQVQVQNRVQQALSRLPS 121
            V  +IEQ+L G D L+YF S S S G + IT TF  GT PD AQV VQNR++   SRLP 
Sbjct: 61   VVSLIEQELNGADNLLYFESQS-SLGSATITATFAPGTHPDLAQVDVQNRLKVVESRLPR 119

Query: 122  AVQQQGLSVTKQQTDFLMLVGLYDETDNATQADIADYLVNNFQDSIARIDGIGATQIFGS 181
             V QQGL V K  T FL+L  L  E     +  ++D L  N  D I R+ G+G  Q++GS
Sbjct: 120  PVTQQGLQVEKVSTGFLLLATLTSEDGKLDETALSDILARNVMDEIRRLKGVGKAQLYGS 179

Query: 182  QYAMRIWLDPYKLAAVKLMPSDVETAIKAQNIEVSAGQIGADPAPANQQINATVTARARL 241
            + AMRIW+DP KL    L P+DV  AI AQN +V+ G IG  P+ + Q+I A V  + +L
Sbjct: 180  ERAMRIWIDPRKLIGFNLTPNDVAEAIAAQNAQVAPGSIGDLPSRSTQEITANVVVKGQL 239

Query: 242  ETPDQFRNIVVKTQSDGSVVHLSDVARVELGNESYTTSARLNGHPASGMALQLAPGADAL 301
             +PD+F  IV++   DGS V + DVARVE+G + Y    RLNG PA+  ++QL+PGA+A+
Sbjct: 240  SSPDEFAAIVLRANPDGSTVTIGDVARVEIGAQEYQYGTRLNGKPATAFSVQLSPGANAM 299

Query: 302  KTAELVKARVAELGGNLPHGYKIVYPRDTTPFIKLSVEEVVQTLIEAVVLVVIVMFVFLQ 361
            +TA LV+A++ +L    P G K   P DT+PF+K+S+E+V+ TL EA++LV  VMF+FLQ
Sbjct: 300  ETATLVRAKMQDLARYFPEGVKYDIPYDTSPFVKVSIEQVINTLFEAMLLVFAVMFLFLQ 359

Query: 362  SWRATLVPAIAVPVVLLGTFGILALFGYSINTLTLFGMVLSIGLLVDDAIVVVENVERIM 421
            + R TL+P + VPV L+GTF ++   G+S+N LTLFGMVL+IG+LVDDAIVVVENVERIM
Sbjct: 360  NLRYTLIPTLVVPVALMGTFAVMLAMGFSVNVLTLFGMVLAIGILVDDAIVVVENVERIM 419

Query: 422  EEEGLSPRDATIKSMMEIGSALVGIALVLSAVLLPMAFFGGSTGVIYRQFSITIVSSMLL 481
             EEGL P+ AT K+M +I  A+VGI LVL AV LPMAF  GS GVIY+QFS+++  S+L 
Sbjct: 420  AEEGLPPKQATRKAMGQISGAIVGITLVLVAVFLPMAFMQGSVGVIYQQFSLSMAVSILF 479

Query: 482  SVVVALILSPALCATMLKPIDKA--HREKGWFGKFNRWFERLTNGYVRRTQGVIGKRGIF 539
            S  +AL L+PALCAT+LKP+ K   H  KG+FG FNR FE ++NGY R     + + G +
Sbjct: 480  SAFLALSLTPALCATLLKPVAKGEHHERKGFFGWFNRRFESMSNGYQRWVVQALKRSGRY 539

Query: 540  WGLYVVVLGILVVLFMRLPTSFLPVEDQGQVMVQVTLPSGAKSSRTNAAIDQVQSYFLND 599
              +Y V+L +L   F +LPT+FLP EDQG  +  + LP GA   RT     Q++++  N 
Sbjct: 540  LLVYAVLLAVLGYGFSQLPTAFLPTEDQGYTITDIQLPPGASRMRTEQVAAQIEAH--NA 597

Query: 600  EKDNVAFAFIMTGFSFQGQGENVGQGFINLAPWDDRKGKTNEAGTIANRATKQLGAIRDA 659
            E+  V    ++ GFSF G G+N    F  L  W +R G  + A +IA+RAT     ++DA
Sbjct: 598  EEPGVGNTTLILGFSFSGSGQNAALAFTTLKDWSER-GADDSAQSIADRATMAFTQLKDA 656

Query: 660  KVLAMTPPAIRGLGQSNGFTFELLNSGGLSRERFLELRNQLIASAQQDPVLAGVRAASLE 719
               ++ PP I GLG+S GF F L + GG+     +  R+QL+ SA +  VL  VR ASL 
Sbjct: 657  IAYSVLPPPIDGLGESTGFEFRLQDRGGMGHAELMAARDQLLESASKSKVLTNVREASLA 716

Query: 720  DTPQLKIDIDTEKLTVLGLTQANVDDVLSSAWGSTYVNDFVDRGRVKRVYMQADAPYRAL 779
            ++PQ++++ID  +   LG++ A++  VL  A GS+YVNDF ++GR++RV +QA+   R+ 
Sbjct: 717  ESPQVQLEIDRRQANALGVSFADIGTVLDVAVGSSYVNDFPNQGRMQRVVVQAEGDQRSQ 776

Query: 780  PSDLDNWMVRSSTTGEMVPFSAFATSHWVMGPSSVQRFNGLSSFEIQGQSAPGASSGDAM 839
              DL N  VR+  +G+MVP  AF  + WV GP  + R+NG  +  I G+ A G SSG+AM
Sbjct: 777  VEDLLNIHVRND-SGKMVPLGAFVQARWVSGPVQLTRYNGYPAVSISGEPAAGYSSGEAM 835

Query: 840  DRMVALQKQLPAGTSYAWSGLSYQEQLSGGQAPLLYGLSVLVVFLCLAALYESWSIPLSV 899
              +  L  QLPAGT   W+GLS QE+LSG QAPLL  LS+LVVFLCLAALYESWSIP +V
Sbjct: 836  AEVERLVAQLPAGTGLEWTGLSLQERLSGSQAPLLMALSLLVVFLCLAALYESWSIPTAV 895

Query: 900  LLVIPLGLIGAVLAVTLRGLENNIFFQVGLLTTMGLAAKNAILIVEFAELAHRNGRNALE 959
            LLV+PLG++GAVLAVTLRG+ N++FF+VGL+T +GL+AKNAILI+EFA+     G +A +
Sbjct: 896  LLVVPLGVLGAVLAVTLRGMPNDVFFKVGLITLIGLSAKNAILIIEFAKHLVDQGVDAAD 955

Query: 960  AALEAARLRFRPILMTSLAFIAGVIPLAIATGAGAQSRVAIGTAVVGGMVTATVLAIFYV 1019
            AA++AARLR RPI+MTSLAFI GV+PLAIA+GA + S+ AIGT V+GGM++AT LA+ +V
Sbjct: 956  AAVQAARLRLRPIVMTSLAFILGVVPLAIASGASSASQQAIGTGVIGGMLSAT-LAVVFV 1014

Query: 1020 PLFFVSIARLFGMDKKKPG-GEPPAQE 1045
            P+FFV + RL G  +     G+P  +E
Sbjct: 1015 PVFFVVVMRLSGRRQAHDSDGQPVPRE 1041