Pairwise Alignments

Query, 1053 a.a., RND efflux system, inner membrane transporter from Sphingobium sp. HT1-2

Subject, 1042 a.a., Multidrug efflux RND transporter MexD from Pseudomonas putida KT2440

 Score =  983 bits (2540), Expect = 0.0
 Identities = 515/1047 (49%), Positives = 710/1047 (67%), Gaps = 11/1047 (1%)

Query: 2    LSRFFIDRPIFAWVIAIGIMLAGLGGMLSLPVAQYPDIAPPGVGISATYPGASAETVETS 61
            +SRFFI RP FAWV+A+ I LAGL  + SLPVAQYP++APP + I+A+YPGASA+ +  S
Sbjct: 1    MSRFFIHRPNFAWVVALFISLAGLLVIPSLPVAQYPNVAPPQISITASYPGASAKVMVES 60

Query: 62   VTQVIEQQLTGIDGLMYFSSSSTSTGQSRITVTFQKGTDPDTAQVQVQNRVQQALSRLPS 121
            VT +IEQ L G  GL+Y+ S++ S G + + VTF+ GTDPD AQV VQNR++QA +R+P 
Sbjct: 61   VTSIIEQSLNGAKGLLYYESTNNSNGVAEVMVTFEPGTDPDMAQVDVQNRLKQAEARMPQ 120

Query: 122  AVQQQGLSVTKQQTDFLMLVGLYDETDNATQAD-IADYLVNNFQDSIARIDGIGATQIFG 180
            AV  QGL V +  + FL++  L     N      +ADY   N  + + R+ G+G  Q F 
Sbjct: 121  AVLTQGLKVEQASSGFLLIYALTSTAGNRGDTTALADYAARNINNELLRVPGVGKLQFFA 180

Query: 181  SQYAMRIWLDPYKLAAVKLMPSDVETAIKAQNIEVSAGQIGADPAPANQQINATVTARAR 240
            S+ AMR+W+DP KL    L   D+ +AI+ QN++V AG  G+ P  + Q++ AT+  +  
Sbjct: 181  SEAAMRVWVDPQKLVGYGLSIDDINSAIRGQNVQVPAGSFGSTPGASEQELTATLAVQGT 240

Query: 241  LETPDQFRNIVVKTQSDGSVVHLSDVARVELGNESYTTSARLNGHPASGMALQLAPGADA 300
            L+TP+ F  IV++   DGS V L DVAR+ +G+E+Y  SARLNGHPA   A+QLAPGA+A
Sbjct: 241  LDTPEAFAGIVLRANPDGSSVRLGDVARMAIGSENYNLSARLNGHPAVAGAVQLAPGANA 300

Query: 301  LKTAELVKARVAELGGNLPHGYKIVYPRDTTPFIKLSVEEVVQTLIEAVVLVVIVMFVFL 360
            ++TA LVK R+AEL    P G +   P DT+ F+ +++E+V+ TLIEA+VLV +VMF+FL
Sbjct: 301  IQTATLVKERLAELSQFFPEGVEYSVPYDTSRFVDVAIEKVIHTLIEAMVLVFLVMFLFL 360

Query: 361  QSWRATLVPAIAVPVVLLGTFGILALFGYSINTLTLFGMVLSIGLLVDDAIVVVENVERI 420
            Q+ R TLVP+I VPV LLGT  I+ L G+S+N +T+FGMVL+IG+LVDDAIVVVENVER+
Sbjct: 361  QNVRYTLVPSIVVPVCLLGTLMIMKLLGFSVNMMTMFGMVLAIGILVDDAIVVVENVERL 420

Query: 421  MEEEGLSPRDATIKSMMEIGSALVGIALVLSAVLLPMAFFGGSTGVIYRQFSITIVSSML 480
            M EEGLSP +ATIK+M ++  A++GI LVL+AV LP+AF  GS GVIY+QFS+++  S+L
Sbjct: 421  MAEEGLSPVEATIKAMGQVSGAIIGITLVLAAVFLPLAFMSGSVGVIYQQFSVSLAVSIL 480

Query: 481  LSVVVALILSPALCATMLKPIDKAHREK-GWFGKFNRWFERLTNGYVRRTQGVIGKRGIF 539
             S  +AL  +PALCAT+LKP+   H EK G+FG FNR F R+T  Y      ++ + G +
Sbjct: 481  FSGFLALTFTPALCATLLKPVPHGHHEKAGFFGAFNRGFARVTERYSLLNSELVARAGRW 540

Query: 540  WGLYVVVLGILVVLFMRLPTSFLPVEDQGQVMVQVTLPSGAKSSRTNAAIDQVQSYFLND 599
               YV +L +L   ++RLP +F+P ED G  +V V LP GA   RT+   + ++ + ++ 
Sbjct: 541  MLAYVGILVVLGYSYLRLPEAFVPAEDLGYSVVDVQLPPGASRVRTDHTAEALEKFLMS- 599

Query: 600  EKDNVAFAFIMTGFSFQGQGENVGQGFINLAPWDDR-KGKTNEAGTIANRATKQLGAIRD 658
             +D VA +FI++GFSF GQG+N    F     W  R K ++ EA T A  A  Q  A  D
Sbjct: 600  -RDAVANSFIVSGFSFSGQGDNAALAFPTFKDWSQRDKAQSAEAETAAINA--QFAANGD 656

Query: 659  AKVLAMTPPAIRGLGQSNGFTFELLNSGGLSRERFLELRNQLIASAQQDPVLAGVRAASL 718
              + A+ PP I GLG S GF   L++ GGL RE  L  R+QL+A A  +PV+       L
Sbjct: 657  GAITAVMPPPIDGLGNSGGFALRLMDRGGLGREALLAARDQLLARANGNPVILYAMMEGL 716

Query: 719  EDTPQLKIDIDTEKLTVLGLTQANVDDVLSSAWGSTYVNDFVDRGRVKRVYMQADAPYRA 778
             + PQL++ ID EK   LG++   ++  L++A+GS  +NDF + GR +RV +QA+   R 
Sbjct: 717  AEAPQLRLHIDREKARALGVSFEAINSTLATAFGSAVINDFTNAGRQQRVVVQAEQGERM 776

Query: 779  LPSDLDNWMVRSSTTGEMVPFSAFATSHWVMGPSSVQRFNGLSSFEIQGQSAPGASSGDA 838
             P  +   +   +  GE VPFSAF T+ W  GP  + R+NG  S  I G ++PG S+G A
Sbjct: 777  TPESVLR-LYAPNANGEQVPFSAFVTTQWEEGPVQLVRYNGYPSIRIAGDASPGHSTGQA 835

Query: 839  MDRMVALQKQLPAGTSYAWSGLSYQEQLSGGQAPLLYGLSVLVVFLCLAALYESWSIPLS 898
            M  M  L  +LP G  YAW+GLSYQE++S GQA  L+ L++LVVFL L ALYESW+IPL+
Sbjct: 836  MAEMERLVSELPPGIGYAWTGLSYQEKVSSGQAASLFALAILVVFLLLVALYESWAIPLT 895

Query: 899  VLLVIPLGLIGAVLAVTLRGLENNIFFQVGLLTTMGLAAKNAILIVEFAELAHRNGRNAL 958
            V+L++P+G +GAV AVTL G+ N+++F+VGL+T +GLAAKNAILIVEFA+     G +  
Sbjct: 896  VMLIVPIGALGAVWAVTLTGMPNDVYFKVGLITIIGLAAKNAILIVEFAKELWEKGYSLC 955

Query: 959  EAALEAARLRFRPILMTSLAFIAGVIPLAIATGAGAQSRVAIGTAVVGGMVTATVLAIFY 1018
            +AA+EAARLRFRPI+MTS+AFI GV+PLAIA+GAGA S+ AIGT V+GGM++AT+L + +
Sbjct: 956  DAAIEAARLRFRPIVMTSMAFILGVVPLAIASGAGAASQRAIGTGVIGGMLSATLLGVVF 1015

Query: 1019 VPLFFVSIARLFGMDKKKPGGEPPAQE 1045
            VP+ FV +  L    K+KP     A E
Sbjct: 1016 VPVCFVWVLTLL---KRKPSPVQQAVE 1039