Pairwise Alignments

Query, 1053 a.a., RND efflux system, inner membrane transporter from Sphingobium sp. HT1-2

Subject, 1050 a.a., Probable efflux pump membrane transporter TtgB from Pseudomonas putida KT2440

 Score = 1135 bits (2937), Expect = 0.0
 Identities = 581/1048 (55%), Positives = 763/1048 (72%), Gaps = 7/1048 (0%)

Query: 2    LSRFFIDRPIFAWVIAIGIMLAGLGGMLSLPVAQYPDIAPPGVGISATYPGASAETVETS 61
            +S+FFIDRPIFAWVIA+ IML G   +L LP+ QYP IAPP + I+ TYPGASA+TV+ +
Sbjct: 1    MSKFFIDRPIFAWVIALVIMLVGALSILKLPINQYPSIAPPAIAIAVTYPGASAQTVQDT 60

Query: 62   VTQVIEQQLTGIDGLMYFSSSSTSTGQSRITVTFQKGTDPDTAQVQVQNRVQQALSRLPS 121
            V QVIEQQL GID L Y SS S S G   IT TF++GT+PDTAQVQVQN++  A   LP 
Sbjct: 61   VVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFEQGTNPDTAQVQVQNKLNLATPLLPQ 120

Query: 122  AVQQQGLSVTKQQTDFLMLVGLYDETDNATQADIADYLVNNFQDSIARIDGIGATQIFGS 181
             VQQQG+ VTK   +FL+++GL  E  + T+ D+A+Y+V+N QD I+R  G+G  Q+FG+
Sbjct: 121  EVQQQGIRVTKAVKNFLLVIGLVSEDGSMTKDDLANYIVSNMQDPISRTAGVGDFQVFGA 180

Query: 182  QYAMRIWLDPYKLAAVKLMPSDVETAIKAQNIEVSAGQIGADPAPANQQINATVTARARL 241
            QYAMRIWLDP KL   +L P DV+TA+ AQN++VS+GQ+G  PA    Q+NAT+  + RL
Sbjct: 181  QYAMRIWLDPAKLNKFQLTPVDVKTAVAAQNVQVSSGQLGGLPALPGTQLNATIIGKTRL 240

Query: 242  ETPDQFRNIVVKTQSDGSVVHLSDVARVELGNESYTTSARLNGHPASGMALQLAPGADAL 301
            +T +QF +I++K   DGS V L DVA+V LG E+Y  SA+ NG PASG+A++LA GA+AL
Sbjct: 241  QTAEQFESILLKVNKDGSQVRLGDVAQVGLGGENYAVSAQFNGKPASGLAVKLATGANAL 300

Query: 302  KTAELVKARVAELGGNLPHGYKIVYPRDTTPFIKLSVEEVVQTLIEAVVLVVIVMFVFLQ 361
             TA+ ++  +  L    P G K V+P DTTP +  S+  V+ TLIEAVVLV +VM++FLQ
Sbjct: 301  DTAKALRETIKGLEPFFPPGVKAVFPYDTTPVVTESISGVIHTLIEAVVLVFLVMYLFLQ 360

Query: 362  SWRATLVPAIAVPVVLLGTFGILALFGYSINTLTLFGMVLSIGLLVDDAIVVVENVERIM 421
            ++RAT++  + VPVVLLGTFGILA  G+SINTLT+F MVL+IGLLVDDAIVVVENVER+M
Sbjct: 361  NFRATIITTMTVPVVLLGTFGILAAAGFSINTLTMFAMVLAIGLLVDDAIVVVENVERVM 420

Query: 422  EEEGLSPRDATIKSMMEIGSALVGIALVLSAVLLPMAFFGGSTGVIYRQFSITIVSSMLL 481
             EEGL P++AT +SM +I  ALVGIALVLSAVLLPMAFFGGSTGVIYRQFSITIVS+M L
Sbjct: 421  SEEGLPPKEATKRSMEQIQGALVGIALVLSAVLLPMAFFGGSTGVIYRQFSITIVSAMGL 480

Query: 482  SVVVALILSPALCATMLKPIDKA--HREK-GWFGKFNRWFERLTNGYVRRTQGVIGKRGI 538
            SV+VALI +PALCATMLKP+ K   H  K G+FG FNR F+R  NGY R    ++  +  
Sbjct: 481  SVLVALIFTPALCATMLKPLKKGEHHTAKGGFFGWFNRNFDRSVNGYERSVGAILRNKVP 540

Query: 539  FWGLYVVVLGILVVLFMRLPTSFLPVEDQGQVMVQVTLPSGAKSSRTNAAIDQVQSYFLN 598
            F   Y +++  ++ LF R+PT+FLP EDQG +  QV  P+G+ + RT   +DQ++ Y L 
Sbjct: 541  FLLAYALIVVGMIWLFARIPTAFLPEEDQGVLFAQVQTPAGSSAERTQVVVDQMREYLLK 600

Query: 599  DEKDNVAFAFIMTGFSFQGQGENVGQGFINLAPWDDRKGKTNEAGTIANRATKQLGAIRD 658
            DE D V+  F + GF+F G+G++ G  FI L PWD+R  K N    +A RA +     RD
Sbjct: 601  DEADTVSSVFTVNGFNFAGRGQSSGMAFIMLKPWDER-SKENSVFALAQRAQQHFFTFRD 659

Query: 659  AKVLAMTPPAIRGLGQSNGFTFELLNSGGLSRERFLELRNQLIASAQQDPVLAGVRAASL 718
            A V A  PPA+  LG + GF   L + GG+  E+ +E RNQ +A A Q  +L+ VR   L
Sbjct: 660  AMVFAFAPPAVLELGNATGFDVFLQDRGGVGHEKLMEARNQFLAKAAQSKILSAVRPNGL 719

Query: 719  EDTPQLKIDIDTEKLTVLGLTQANVDDVLSSAWGSTYVNDFVDRGRVKRVYMQADAPYRA 778
             D PQ ++ ID E+ + LG+T A++++ LS A G++YVNDF+DRGRVK+VY+Q +   R 
Sbjct: 720  NDEPQYQLTIDDERASALGVTIADINNTLSIALGASYVNDFIDRGRVKKVYIQGEPSARM 779

Query: 779  LPSDLDNWMVRSSTTGEMVPFSAFATSHWVMGPSSVQRFNGLSSFEIQGQSAPGASSGDA 838
             P DL  W VR+   GEMVPFS+FA   W  G   + R+NG+ + EI G  APG S+G+A
Sbjct: 780  SPEDLQKWYVRNG-AGEMVPFSSFAKGEWTYGSPKLSRYNGVEAMEILGAPAPGYSTGEA 838

Query: 839  MDRMVALQKQLPAGTSYAWSGLSYQEQLSGGQAPLLYGLSVLVVFLCLAALYESWSIPLS 898
            M  +  +  +LP+G  ++W+G+SY+E+LSG Q P L+ LSVL VFLCLAALYESWSIP++
Sbjct: 839  MAEVERIAGELPSGIGFSWTGMSYEEKLSGSQMPALFALSVLFVFLCLAALYESWSIPIA 898

Query: 899  VLLVIPLGLIGAVLAVTLRGLENNIFFQVGLLTTMGLAAKNAILIVEFAELAHRNGRNAL 958
            V+LV+PLG+IGA++A +LRGL N+++F VGLLTT+GLAAKNAILIVEFA+  H  GR+  
Sbjct: 899  VVLVVPLGIIGALIATSLRGLSNDVYFLVGLLTTIGLAAKNAILIVEFAKELHEQGRSLY 958

Query: 959  EAALEAARLRFRPILMTSLAFIAGVIPLAIATGAGAQSRVAIGTAVVGGMVTATVLAIFY 1018
            +AA+EA R+R RPI+MTSLAFI GV+PL IA+GAGA S+ AIGT V+GGM++ATVLAIF+
Sbjct: 959  DAAIEACRMRLRPIIMTSLAFILGVVPLTIASGAGAGSQHAIGTGVIGGMISATVLAIFW 1018

Query: 1019 VPLFFVSIARLFGMDKKKPGGEPPAQEP 1046
            VPLFFV+++ LFG   K+P  +   + P
Sbjct: 1019 VPLFFVAVSSLFG--SKEPEKDVTPENP 1044