Pairwise Alignments

Query, 480 a.a., Type I secretion outer membrane protein, TolC family from Sphingobium sp. HT1-2

Subject, 477 a.a., Outer membrane efflux protein from Pseudomonas putida KT2440

 Score =  111 bits (277), Expect = 6e-29
 Identities = 97/407 (23%), Positives = 181/407 (44%), Gaps = 17/407 (4%)

Query: 38  KAYRTNPTLTGARAGQRATDENVPIQKAAGRPTANSQLQFQELVIRPSNSFLAPHRSASA 97
           +A   N  L  ARA   A  E VP  +A   P  ++  +      +     +  +RS ++
Sbjct: 38  EAVDNNADLAAARADYGARREVVPQARAGLLPNLSAGAEMMNTRTKLDEPSITSNRSGNS 97

Query: 98  -SGSIDVPIYSGGTVRNSVKAAETRVESGQANLRGTEASVFSQTVAAYMDVIRDIALVSL 156
            S ++  PI+        ++AAE   E     L  TE ++  QT   Y  V+R    ++ 
Sbjct: 98  WSATLAQPIFRADRWFQ-LQAAEAVNEQAALELSATEQNLILQTAQNYFAVLRAQDNLAA 156

Query: 157 NAANVKVLEVNLQATNDRFEVGDVTRTDVAQSESRLELARSDLQRAESNLITSRENYIAM 216
             A     +  L  +N+RF+VG   +TDV QS++  + AR++   AE  +  + E  + +
Sbjct: 157 TKAEEAAFKRQLDQSNERFDVGLSDKTDVLQSQASYDTARANRIIAERQVQDAFEALVTL 216

Query: 217 VGEAPVDLE----SPPALPGLPADPDSAVRVALADNPDILAAQKSREAARYDVKAAKGAT 272
                  ++    S P     P D  + V  A   N ++LA   +  AA   ++  K   
Sbjct: 217 TNREYTSIQGVVHSLPVQVPTPNDAKAWVETAGRQNLNLLATNYAVSAAEETLRQRKAGH 276

Query: 273 LPTLSG---FSQGS-----YTDYMDKDIAAN---KQAAVGATLTIPFYQGGRPAAQVRQN 321
            PTL     + +G      +T+     +  +   +Q +VG  L IP Y GG  ++QVR+ 
Sbjct: 277 APTLDAVAKYQKGDNDSLGFTNPSQLGVRYSGDVEQTSVGLQLNIPIYSGGLTSSQVREA 336

Query: 322 QALESQAIERQIEVERGVISQARAAYAALQASLRTIQSSQKAVDAAELSLEGVRAENSVG 381
               SQ+ +++  + R V+   R  + A+   +  +Q+ ++++ + + +LE       VG
Sbjct: 337 YQRLSQSEQQRESLRRQVVENTRNLHRAVNTDVEQVQARKQSIISNQSALEATEIGYQVG 396

Query: 382 SRTILDILNAEQESLNAKVELVTARRNAYVAGFTLLAAMGHAEADDL 428
           +R I+D+L+A+++   +  +   +R +  +   +L  A G     DL
Sbjct: 397 TRNIVDVLDAQRQLYTSVRDYNNSRYDYILDNLSLKQAAGTLSPQDL 443



 Score = 40.8 bits (94), Expect = 1e-07
 Identities = 44/189 (23%), Positives = 80/189 (42%), Gaps = 5/189 (2%)

Query: 239 SAVRVALADNPDILAAQKSREAARYDVKAAKGATLPTLSGFSQ--GSYTDYMDKDIAANK 296
           S  + A+ +N D+ AA+    A R  V  A+   LP LS  ++   + T   +  I +N+
Sbjct: 34  SVYQEAVDNNADLAAARADYGARREVVPQARAGLLPNLSAGAEMMNTRTKLDEPSITSNR 93

Query: 297 QA-AVGATLTIPFYQGGRPAAQVRQNQALESQAIERQIEVERGVISQARAAYAALQASLR 355
              +  ATL  P ++  R   Q++  +A+  QA       E+ +I Q    Y A+  +  
Sbjct: 94  SGNSWSATLAQPIFRADR-WFQLQAAEAVNEQAALELSATEQNLILQTAQNYFAVLRAQD 152

Query: 356 TIQSSQKAVDAAELSLEGVRAENSVGSRTILDILNAEQESLNAKVELVTARRNAYVAGFT 415
            + +++    A +  L+       VG     D+L ++     A+   + A R    A F 
Sbjct: 153 NLAATKAEEAAFKRQLDQSNERFDVGLSDKTDVLQSQASYDTARANRIIAERQVQDA-FE 211

Query: 416 LLAAMGHAE 424
            L  + + E
Sbjct: 212 ALVTLTNRE 220