Pairwise Alignments

Query, 333 a.a., putative integrase/recombinase from Sphingobium sp. HT1-2

Subject, 305 a.a., site-specific tyrosine recombinase XerD from Rhodanobacter sp000427505 FW510-R12

 Score = 57.0 bits (136), Expect = 6e-13
 Identities = 78/291 (26%), Positives = 109/291 (37%), Gaps = 41/291 (14%)

Query: 32  AGSTHKAYASDWVRFCAFCDARNVEALPAHPDIVALFAHVEAEAGIAPVTIGRRVAAINH 91
           A  T +AY  D      +  AR      A  + ++ + H    A +   +I RR +A   
Sbjct: 32  ADRTLEAYRRDLEALALWLAARGRNLRTARREDISAY-HGAQPAAVR--SIARRQSAFRR 88

Query: 92  HH-----KEAGFPSPTARDAAGVIATMLAGVRRKYARRKEQKAPAEADVLKAMLATIEGM 146
           ++      E GF  PT              + R    R   KA AE ++   + A   G 
Sbjct: 89  YYAFLARSEPGFADPTLL------------IERPKLPRSLPKALAEREIEGLLTAPDTGT 136

Query: 147 GLRALRDRAILAVGMAGAFRRSELAAMQLPDLAFAQSGLRITIPQSKRDQEQVGQVIAIP 206
            L  LRDRA+L +  A   R SEL  + L  L   Q  LR+T    K     VG+   + 
Sbjct: 137 TL-GLRDRAMLELMYASGLRVSELVELPLAALNPRQGVLRVTGKGGKDRLVPVGEEALVR 195

Query: 207 EGRIIRPVNLLKHWLHAAGLSGLDPATGKPRQGAVFRRLTRSDALTDNPITDKTVARLVK 266
            G               A L+   PA  K RQ A      R + +     T +    LVK
Sbjct: 196 IG---------------AYLTDARPALAKGRQPAALFLSRRGEGM-----TRQMFWTLVK 235

Query: 267 TAAAAAGLDPSLYSGHSLRAGFLTEAASKRANLFKMKDHSRHKSLDTVADY 317
             A   G++P   S H LR  F T   +  A+L  ++    H SL T   Y
Sbjct: 236 RYALKVGINPKRISPHVLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIY 286