Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor cnrH from Sphingobium sp. HT1-2

Subject, 178 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 73.9 bits (180), Expect = 1e-18
 Identities = 49/163 (30%), Positives = 82/163 (50%), Gaps = 6/163 (3%)

Query: 27  EIMRRHQTAIFRLVRGLVGNAEEALDLTQDCFVSAFSHLRKYDGARPLRAWLSRIAINKC 86
           E+ R H   I + ++  +GNA +A +L QD FV   S  R ++     RA+L R++ N C
Sbjct: 16  ELYRSHHGWIRQWLQRKLGNAHDAAELAQDVFVRLLSKPRVFNDHEHARAYLGRMSRNAC 75

Query: 87  RDWRRRQRVRQLFTFGSAPSDDEIEQVPDDAPSAHASAESKIEVERLSAAISALPATLRE 146
            D+ RR+RV Q +    A   +++      APS    A     +E+L A    +P  + E
Sbjct: 76  VDFWRRRRVEQAYLEVLAAQPEQL------APSLEHQAVILETLEQLQAMFERMPQRVAE 129

Query: 147 VLMLRTVEGLSQSEAAKALSVSSKAVETRLYRARARLAEILAE 189
              +  ++G+ Q E A+ L VS ++V + L +A  +   + AE
Sbjct: 130 AFSMAQLQGMKQREIAEQLGVSERSVNSYLAQAMYQCLLLEAE 172