Pairwise Alignments

Query, 497 a.a., Copper/silver efflux RND transporter, membrane fusion protein CusB from Sphingobium sp. HT1-2

Subject, 376 a.a., RND transporter from Pseudomonas simiae WCS417

 Score = 84.7 bits (208), Expect = 5e-21
 Identities = 63/222 (28%), Positives = 101/222 (45%), Gaps = 29/222 (13%)

Query: 218 ISTPTGGVIKTLNVRGGMTLMAGQTLAEVNGLGTVWLNAAVPEAVAGPLKPGQAVRAALA 277
           I  P GG I    V  G  L +G  +A +  L +++++  +PE     + PGQ V+  ++
Sbjct: 166 IVAPFGGTIGIRQVDVGDYLASGTVIATLQDLSSLYVDFYIPEHAVPKVAPGQPVQVEVS 225

Query: 278 AFPGETISGRVSAILPETQADSRTLTVRIELPNRGGRLRPGMFATVS-FGGSAQPALLVP 336
           A+PGE   G +SAI P+ +  +R + VR  L N  G+L PGMF  +     +  P ++VP
Sbjct: 226 AYPGEQFPGSISAINPKVENSTRNVLVRATLANPEGKLLPGMFTRLDVLLPNPAPQIVVP 285

Query: 337 SEALIRTGKRTLVMLALDKGR-----YRPAE-----------VQTGREAGDDTEILAGLS 380
             A+  T     V    +K        + A+           V+TG   G    +  GL 
Sbjct: 286 EGAITYTLYGNSVYAVAEKKTEGGEVEKDADGKPLLIAERRFVETGERRGGLVLVSKGLK 345

Query: 381 EGEKIVASGQFLIDSEASLSGVEARPIGADMPKSPAKPMPTG 422
            GE++V++GQ  +D+            G  +  SP K +P G
Sbjct: 346 AGEQVVSAGQLKLDN------------GTPIAISPDKNLPAG 375