Pairwise Alignments

Query, 1031 a.a., RND efflux system, inner membrane transporter from Sphingobium sp. HT1-2

Subject, 1027 a.a., multidrug transporter from Pseudomonas simiae WCS417

 Score =  713 bits (1841), Expect = 0.0
 Identities = 395/1022 (38%), Positives = 606/1022 (59%), Gaps = 8/1022 (0%)

Query: 5    MKGINLSRWALTHQQMVGFLLVLAAVAGLFSYMALGRKEDPEFTVKTMMITVGWPGATAQ 64
            M+GINLS  A+ H+ +  FL++    AG+FS+  LGR EDP FTVK M IT  WPGATAQ
Sbjct: 1    MRGINLSELAVKHRAVTLFLIIAILAAGIFSFGKLGRAEDPSFTVKVMTITAAWPGATAQ 60

Query: 65   QMSQQVIKPIETVLTENIAEIDYVKSKARPGQATLNVTLISTVKSSAVPDIWYRIRKTVT 124
            +M +QV   +E  L E +   D V++ A+PG  ++ +T   + + S + D++Y+ RK ++
Sbjct: 61   EMQEQVADRLEKRLQE-LDYYDRVETIAQPGFVSMRMTYKESTRPSEIQDLFYQTRKKLS 119

Query: 125  DNRADLPNGVVGPAFNDEFGTTYGNIYAVTGDGFSYPVLKRYAETLRDRIQALPDVAKTQ 184
            D  A LP GV+GP FNDE+   Y  +YA+  +   +    + AE LR  +  LP V K  
Sbjct: 120  DEAAKLPQGVIGPFFNDEYSDVYFALYALEAEHLPHRQQVQMAEELRQGLLNLPGVKKVN 179

Query: 185  IIGAQDEAIYVTYDSARLAMSGISAQAIADALDTTNAVAASGIVEAGAERVRMQVTGDFA 244
            I+G Q + ++V +   RLA  GI    I  AL   NAVA SG VE    R  +++ G F 
Sbjct: 180  ILGEQAQRVFVEFSYERLATLGIKPDQIFAALAAQNAVAPSGFVETAGARAYIRIDGAFD 239

Query: 245  SVEAIAATPIVANGKSVRLDAIAKVERKPVHPATFRMRFGAKDAVGVGISLRSDGDVARL 304
            S+  I   P+  NG+ +R+  +A V R    P ++R+R     A+ +G+ +    +   L
Sbjct: 240  SLSLIENVPLEVNGRVLRIANVATVSRGYEDPPSYRIRHQGDPALMLGVIMEKHWNGLEL 299

Query: 305  GEDLKHTIAALQSEMPVGVDIHTVSDQTRVVDESVGEFTTSLIEAIVIVLAVNFLSLGWR 364
             + LK   A +Q+++P+GV+   VSDQ + +  +V EF      A+ +V+ ++ L+LG+R
Sbjct: 300  DKSLKAQEAKIQADLPLGVNFAKVSDQAKNIRLAVNEFMLKFFVALAVVMVISLLALGFR 359

Query: 365  PGIVVALCIPLVLAMTFVCMLYVGIDLQRISLGALIIALGLLVDDAIIVVEAVATHLEAG 424
             G+VVA  +PL L++ FV ML  G +  RI+LGALII+LGLLVDDAII +E +   LE G
Sbjct: 360  VGLVVAAAVPLTLSVVFVIMLLTGREFDRITLGALIISLGLLVDDAIIAIEMMVVKLEEG 419

Query: 425  WTRTRAAVSAYSVTAVPMLVGTLITVAGFLPIAMSKATASEYVISLFQVIAISLILSWVV 484
            + R  AA  A+S TA PML GTL+T+ GFLP+  +++ A EY  ++F ++  +LI SW+V
Sbjct: 420  FDRIHAATFAWSSTAAPMLTGTLVTIIGFLPVGFARSGAGEYAGNIFWIVGFALISSWLV 479

Query: 485  AVIFTPFIAYHLLPQRADARDDAGEPEEQYEGRFYGWFRRMLDRCLDRRKTVVAVALAMF 544
            AV+FTP++   LLPQ    +   G  +  Y GR+Y   R ++  C+ RR  V  + +  F
Sbjct: 480  AVVFTPYLGVKLLPQ---IKPVPGGHDAIYAGRYYQKLRSLVQACVRRRWLVTGLVVGAF 536

Query: 545  VGSMLLFQIGVPRQFFPASDRPELVVDLQLSQNASFAQTQAVAARMEQLLARDDRVVSTT 604
            V  +    + V +QFFP SDR EL++++ +   ++F  T+AVAAR+E+ L ++ +     
Sbjct: 537  VLCVAGMGV-VKKQFFPNSDRSELILEVYMPPGSAFKSTEAVAARLEKALLQEPQTTLVD 595

Query: 605  AYLGGGSPRFYLPLNVQTPDITLAELVLQTRDEEAREGV-IASIQSLFATHFPEARGRVS 663
             Y+GGG+PRF+L LN + PD   A+L++QT D  AR+ + +   + + A  F  AR RV+
Sbjct: 596  TYVGGGAPRFFLSLNPELPDPAFAKLIVQTPDSHARDALKLRMRERIAAGEFASARVRVT 655

Query: 664  RLENGPSVGQPVQYRVAGPDLTQIMPVAKRLEELIRADSHARDVNSDLGEPLKAIRVDLD 723
            +L  GP V  PV +RV+GP+L  +  V++ + +++ A++  +D   D GE     R+ LD
Sbjct: 656  QLLFGPPVPFPVVFRVSGPNLDVLRGVSEDVRKVVAANTLTKDAFLDWGERTSGYRLVLD 715

Query: 724  QDKVRALGLSTQAVQQSLQAAIGGAGTTSFRDRDLALEVVLRLSAAERTDLGRIANLPIS 783
            QD++R LG +   V+  L A + G   T  R+ +  + VV R    +R DLG + N+ ++
Sbjct: 716  QDRLRLLGFTPNEVKSQLNALLSGNPITEVREGNRTVSVVARAQGGQREDLGNLNNMTLT 775

Query: 784  TPNG-AVPLAQLGHVSAGSEPAVIYQRNRQPTITISAD-VEGEQASDLTKRIEPQIEALR 841
               G +VPLAQ+GH  A  E  ++ +RNR  T+ + AD ++G Q  D+   +   ++ L 
Sbjct: 776  NSAGTSVPLAQVGHFQAVMEEPILKRRNRATTVEVRADIIDGVQPPDVEMAVYKDLQPLI 835

Query: 842  RDLPSGASIVKGGSEEQSSINQKATMAAVPFAIFVIVILLMLQLQNVKRMLVVLATGPLA 901
              LP+G  I  GG  E+S+    A  A  P  I + + ++M Q+++   M +V AT PL 
Sbjct: 836  AKLPAGYQIDIGGPVEESAKANVALAALFPIMILLTLTVIMFQVRSFGVMFMVFATAPLG 895

Query: 902  LIGVALIMALFRIPFGFVAMLGSLALFGMVLRNSVILIAQIDTLSGHGLAMREAVREAAV 961
            LIG    + LF  PFGF A+LG + + G+++RN++I   QI     HG+ +  A+ EA V
Sbjct: 896  LIGAVPTLLLFNQPFGFNAILGLIGIGGILMRNTLIFTDQIRQNQDHGMPIHAAIIEATV 955

Query: 962  HRLRPILLTALAAILAMIPLTRSTFWGPMAWAIMGGLMVATILTLIVLPALYELVFDRPQ 1021
             R RP++LTALAA LA IPLT S FW  +A+ ++GG++V T+LTL+ LPAL  LV  R +
Sbjct: 956  RRARPVILTALAAALAFIPLTLSVFWSSLAYVLIGGVLVGTVLTLLFLPALCSLVLGREK 1015

Query: 1022 HR 1023
             R
Sbjct: 1016 TR 1017