Pairwise Alignments

Query, 1031 a.a., RND efflux system, inner membrane transporter from Sphingobium sp. HT1-2

Subject, 1021 a.a., efflux RND transporter permease subunit from Dickeya dianthicola ME23

 Score =  763 bits (1970), Expect = 0.0
 Identities = 428/1011 (42%), Positives = 610/1011 (60%), Gaps = 13/1011 (1%)

Query: 9    NLSRWALTHQQMVGFLLVLAAVAGLFSYMALGRKEDPEFTVKTMMITVGWPGATAQQMSQ 68
            NLS WAL HQQ+V F +++   AG+ SY  L R EDP FT+KT +++  WPGAT Q    
Sbjct: 10   NLSAWALAHQQLVAFFMLVIVAAGVMSYERLPRNEDPAFTIKTAVVSASWPGATVQDTVS 69

Query: 69   QVIKPIETVLTENIAEIDYVKSKARPGQATLNVTLISTVKSSAVPDIWYRIRKTVTDNRA 128
             V   +E  L E    +D+++S +RPG+A + V L  +   S V  IWY IRK + D   
Sbjct: 70   FVTDVLEKKLQET-PYLDFIESYSRPGEAVIFVNLRDSTPPSEVQGIWYAIRKKMKDIAP 128

Query: 129  DLPNGVVGPAFNDEFGTTYGNIYAVTGDGFSYPVLKRYAETLRDRIQALPDVAKTQIIGA 188
             LP+GV  PA NDEF  T+G IY  T DG+S   L+   + +R  + A PDV K  ++G 
Sbjct: 129  SLPDGVGEPAVNDEFDDTFGTIYGFTADGYSPRELRDRVDDIRTELLATPDVGKIDVLGV 188

Query: 189  QDEAIYVTYDSARLAMSGISAQAIADALDTTNAVAASGIVEAGAERVRMQVTGDFASVEA 248
            QDE I   +   +LA  G+  Q +  AL   NAV+ +G +    ++V ++V+G F S E+
Sbjct: 189  QDEQIVAAFSPRQLAGMGLDLQQVTAALQAQNAVSPTGAIRTDNDKVALRVSGAFVSEES 248

Query: 249  IAATPIVANGKSVRLDAIAKVERKPVHPATFRMRFGAKDAVGVGISLRSDGDVARLGEDL 308
            +    +   G+ + L  IA V R+   P     R   + A+G+ +S+   G++   G+ L
Sbjct: 249  LRQVTLHIGGRFIPLTDIATVYRQAAEPPAPAFRVNGQPAIGLAVSMAPTGNMLDFGQAL 308

Query: 309  KHTIAALQSEMPVGVDIHTVSDQTRVVDESVGEFTTSLIEAIVIVLAVNFLSLGWRPGIV 368
            +  +A + + +P G+++  V+DQ+ VV  SV  F   L+EA+VIVLAV+F+SLG R G+V
Sbjct: 309  RSKMATIGASLPHGIEVINVADQSSVVKSSVNGFVKVLLEAVVIVLAVSFVSLGSRAGLV 368

Query: 369  VALCIPLVLAMTFVCMLYVGIDLQRISLGALIIALGLLVDDAIIVVEAVATHLEAGWTRT 428
            VA  IP+VL MTF  M   GI LQRISLGALIIALGLLVDDA+I VEA+ + LE G  R 
Sbjct: 369  VAASIPMVLTMTFTGMEIAGIGLQRISLGALIIALGLLVDDAMITVEAMVSSLEKGEARE 428

Query: 429  RAAVSAYSVTAVPMLVGTLITVAGFLPIAMSKATASEYVISLFQVIAISLILSWVVAVIF 488
            +AA  AY  TA PML GTL+ VAGF+P+  + ++A EY  SLF V+ ISL+ SW VAV+F
Sbjct: 429  QAATRAYDTTAFPMLTGTLVMVAGFIPVGFAASSAGEYCYSLFIVVLISLLSSWAVAVLF 488

Query: 489  TPFIAYHLLPQRADARDDAGEPEEQYEGRFYGWFRRMLDRCLDRRKTVVAVALAMFVGSM 548
            +P I   LLP+  +A D        + GR    + R+L   L  R   + +++A+   ++
Sbjct: 489  SPLIGVWLLPKAMNAHD-------HHAGRLSRAYDRLLSTALRYRGRTLLLSVALL--AL 539

Query: 549  LLFQIG-VPRQFFPASDRPELVVDLQLSQNASFAQTQAVAARMEQLLARDDRVVSTTAYL 607
             +   G +  +FFPASDRPEL+V L L +NAS   T+    R+EQ L  D  +   + Y+
Sbjct: 540  AVVAAGRLEGEFFPASDRPELLVSLTLPRNASQQATEREVVRLEQSLKNDPDLDHFSTYV 599

Query: 608  GGGSPRFYLPLNVQTPDITLAELVLQTRDEEAREGVIASIQSLFATHFPEARGRVSRLEN 667
            G G+ RFYLP++V   +  +A+LV+  +  + R+ + A ++      F     RVS LE 
Sbjct: 600  GSGAVRFYLPMDVLLQNENIAQLVVVAKGLKERDALRARLEKRLQQDFSHLVTRVSPLEL 659

Query: 668  GPSVGQPVQYRVAGPDLTQIMPVAKRLEELIRADSHARDVNSDLGEPLKAIRVDLDQDKV 727
            GP VG P++YRV GPD+ ++   A  L  LI  +  AR+VN   GEP +AIR+DL+Q + 
Sbjct: 660  GPPVGWPLKYRVTGPDIDKVREYAAGLATLIGGNPDAREVNLTAGEPERAIRIDLNQTEA 719

Query: 728  RALGLSTQAVQQSLQAAIGGAGTTSFRDRDLALEVVLRLSAAERTDLGRIANLPISTPNG 787
            RA+G+S+Q V  +L     G+  TS RDR+  + VV+R    ER +L  +A+L +   NG
Sbjct: 720  RAVGISSQDVASALATIFSGSVVTSVRDRNRMVGVVVRARDEERQNLDTVASLQLRAANG 779

Query: 788  -AVPLAQLGHVSAGSEPAVIYQRNRQPTITISADV-EGEQASDLTKRIEPQIEALRRDLP 845
              VPL Q+  V  G +  +I++R R P IT+  D+  G +A  L+  + PQ+ A +  LP
Sbjct: 780  QRVPLGQIASVGYGVDEPIIWRRQRLPFITVQTDLAPGVRAQTLSTTLAPQVAAYQAALP 839

Query: 846  SGASIVKGGSEEQSSINQKATMAAVPFAIFVIVILLMLQLQNVKRMLVVLATGPLALIGV 905
            +G  I +GGS  +S+    +    +P  + V++ILLM+QLQ   RM++ L   P  LIGV
Sbjct: 840  AGYHIEEGGSAAESNKGNNSVYQVLPVTLLVMLILLMVQLQRFSRMMLALLMAPFGLIGV 899

Query: 906  ALIMALFRIPFGFVAMLGSLALFGMVLRNSVILIAQIDTLSGHGLAMREAVREAAVHRLR 965
               M     P GFVA+LG +AL GM++RN+VILI+++DT +  G+   EA+  AA HR R
Sbjct: 900  VAAMLPTGTPMGFVALLGVIALAGMIIRNAVILISEVDTNTAAGMTTNEAIIHAARHRSR 959

Query: 966  PILLTALAAILAMIPLTRSTFWGPMAWAIMGGLMVATILTLIVLPALYELV 1016
            PILLTALAAIL MIP+    FWGPMA+AI+GGL+VAT+LTL VLPA   LV
Sbjct: 960  PILLTALAAILGMIPIATQVFWGPMAYAIIGGLIVATLLTLTVLPAAVSLV 1010