Pairwise Alignments

Query, 357 a.a., hypothetical protein from Sphingobium sp. HT1-2

Subject, 366 a.a., RND membrane fusion protein from Pseudomonas putida KT2440

 Score =  204 bits (520), Expect = 2e-57
 Identities = 126/343 (36%), Positives = 193/343 (56%), Gaps = 4/343 (1%)

Query: 11  ALLLLPACRDEPQV-RDERRAVAVQRIGADAGTSTSYAGEIRSAFESQIGFEVAGRIVER 69
           A LLL AC  E       R A+ VQ   A+A    SY GE+R+ FE ++ F + G++ +R
Sbjct: 14  AALLLAACGQEAAPPAAPRPALVVQPQPAEAAAD-SYPGEVRARFEPELAFRIGGKVSKR 72

Query: 70  RVDLGSSVHAGQTLLRLDNSDYARALDSAAAQSSSARTAAAVQQADLARSRELLKQGFIS 129
            V+ G  V A Q L  LD  D    L++  AQ ++A    A+ +A+  R ++LL++  +S
Sbjct: 73  LVEEGQRVKADQPLAELDPQDVRLQLEANRAQLAAAEANLALVRAERDRYQKLLERQMVS 132

Query: 130 PAEFDQQKAAAIQAQAQLRAAGAQSGTASAQLSRTVLTAPRAGVVTQIQGEVGQVVGAGQ 189
            +++D  +       A+L+ A A+   A  Q    VL AP+AGV+ + Q EVGQVV AGQ
Sbjct: 133 HSQYDNAENLYRAGLARLKQAKAEFDVAGNQAEYAVLRAPQAGVIAKRQVEVGQVVAAGQ 192

Query: 190 TIVTLADPSRPEIAVALPEGSLDRIRSASRLSVSVWSSPGRRYAARLRSISGAADPATRT 249
           T+ TLA     E+A+ LPE    R      +SV +WS P  R+  R+R +S AADP +RT
Sbjct: 193 TVFTLAADGEREVAIGLPEQQFARFAVGQPVSVELWSHPQARFQGRIRELSPAADPRSRT 252

Query: 250 FAARLSVDAPAQALLMGETAELRVEGAAGDAAVRVPLTAVLQSNGRAQAWVLDRRTMVVQ 309
           FAAR++    A    +G++A + +    G   + VPL+AV   NG+A  W +++ +  ++
Sbjct: 253 FAARIAFTTAAVPAELGQSARVFI-AKDGLIPLAVPLSAVTAENGQAYVWRVNKESR-LE 310

Query: 310 PRAVQIGAAQGDMLTIRSGLKPGETIVTAGVHLLRAGEKVRIV 352
              V++GA   D + +  GL PG+ +V AG H+LR G++VR V
Sbjct: 311 RATVRLGAYGSDSVPVLEGLDPGDWVVAAGGHVLREGQEVRPV 353