Pairwise Alignments

Query, 553 a.a., Cytochrome c oxidase (cbb3-type) subunit CcoN (EC 1.9.3.1) from Sphingobium sp. HT1-2

Subject, 529 a.a., Cytochrome c oxidase subunit 1 from Pseudomonas putida KT2440

 Score = 81.3 bits (199), Expect = 9e-20
 Identities = 91/409 (22%), Positives = 176/409 (43%), Gaps = 47/409 (11%)

Query: 84  LFWGVVGFLVG----VVIATQMVVPTLNL-EPWFSFGRMRPLHTSAVIFAFGGNALIATS 138
           L++  + FL+G    +VI  ++  P L + EP F F +M  +H   ++F     A +  +
Sbjct: 39  LWFSFIMFLLGGSFAMVIRAELFQPGLQIVEPAF-FNQMTTMHGLIMVFGAVMPAFVGLA 97

Query: 139 FYVVQRTCRAR-LAFPALARFVFWGYQF-FIVLAAT----------GYLMGVTASREYAE 186
            +++     A  +A P +  F FW     F++L +T          G+      S  YA 
Sbjct: 98  NWMIPLMIGAPDMALPRMNNFSFWLLPAAFLLLVSTLFSPGGGPNFGWTFYAPLSTTYAP 157

Query: 187 PEWYVDLW----LTIVWVAYFVVFVGTLLRRTEPH-------IYVANWFYLSFIITIAML 235
                 ++    + I  +   +  + T+L    P        ++V  W   +F++ IA++
Sbjct: 158 ASVTFFIFAIHLMGISSIMGAINVIATILNLRAPGMTLMKMPLFVWTWLITAFLL-IAVM 216

Query: 236 HIVNNLAVPASL---FGSKSYSAFAGVQDALTQ---WWYGHNAVGFFLTAGFLAMMYYFV 289
            ++  +     +   FG+  +SA  G    L Q   W++GH  V   +   F A+    +
Sbjct: 217 PVLAGVVTMMLMDIHFGTSFFSAAGGGDPVLFQHVFWFFGHPEVYIMILPAFGAVSS-II 275

Query: 290 PKQAERPIYSYRLSIIHFWSLIFLYIWAGPHHLHYTALPDWAQTLGMVFSVVLWMPSWGG 349
           P  + +P++ Y   +    ++ FL      HH+    +P   +   M  ++++ +P+   
Sbjct: 276 PAFSRKPLFGYTSMVYATGAIAFLSFIVWAHHMFVVGIPVVGELFFMYATMLIAVPTGVK 335

Query: 350 MINGLMTLNGAWDKIRTDPIIRMMVFALAF---YGMATFEGPMLSIKAVNSLSHYTEWTI 406
           + N + T+   W+   T      M+FA+AF   + +  F G ML+I   +   H T + +
Sbjct: 336 VFNWVSTM---WEGSLT--FETPMLFAIAFVILFTIGGFSGLMLAIAPADFQYHDTYFVV 390

Query: 407 GHVHSGALGWNGMITFAALYYLVPRLWGRERLYSLRMVNWHFWLATLGL 455
            H H   +       FA+ YY +P+  G   +Y   +   HFWL+ +G+
Sbjct: 391 AHFHYVLVPGAIFGIFASAYYWLPKWTG--HMYDETLGKLHFWLSFVGM 437



 Score = 24.6 bits (52), Expect = 0.010
 Identities = 11/40 (27%), Positives = 20/40 (50%)

Query: 427 YLVPRLWGRERLYSLRMVNWHFWLATLGLVLYAAALWVAG 466
           +++P + G   +   RM N+ FWL     +L  + L+  G
Sbjct: 99  WMIPLMIGAPDMALPRMNNFSFWLLPAAFLLLVSTLFSPG 138