Pairwise Alignments

Query, 592 a.a., Bis-ABC ATPase Uup from Sphingobium sp. HT1-2

Subject, 642 a.a., DNA-binding ATPase involved in replication from Pseudomonas putida KT2440

 Score =  420 bits (1080), Expect = e-122
 Identities = 253/638 (39%), Positives = 357/638 (55%), Gaps = 58/638 (9%)

Query: 5   ILSFENLGLSQGSHWLFRHIDIHVGQRDRLALIGRNGAGKTTLLKLIGGQIEADEGIRSV 64
           +L F ++ L+ G+  L   +   + + +R+ +IGRNG GK+++L+L+ G+ + D+G    
Sbjct: 3   LLKFSDVSLAFGAMPLLDKVSWQIARGERVCIIGRNGTGKSSMLRLVKGEQKGDDGEIWR 62

Query: 65  QPGARVVTLEQDPDVSAFKTLHDFALAGA-------------------------FAPPAH 99
            PG ++  L Q+  V+  +T+ D   AG                               H
Sbjct: 63  APGLKIGELPQELPVADERTVFDVVAAGLDGVGELLAQFHHLSMNIQGDEDLEKLMHVQH 122

Query: 100 EVEA------------IADQLGIDLSREAATASGGERRRAAIARALASEPDLLLLDEPTN 147
           E+EA               +L +   +  A  SGG RRR  +A+AL SEPDLLLLDEPTN
Sbjct: 123 ELEARDGWRLQQVVESTLSRLQLPADKTLAELSGGWRRRVLLAQALVSEPDLLLLDEPTN 182

Query: 148 HLDIAAIDWLESWLARYTGAFIVISHDRAFLTRLTRQTLWLDRGQMRRNEIGFGGFEDWM 207
           HLDI AI WLE  L  + GA + I+HDR+FL  L  + L LDRG +      +  F    
Sbjct: 183 HLDIGAIAWLEEALRGFNGAVLFITHDRSFLQNLATRILELDRGGLIDWNGDYASFLVHK 242

Query: 208 EAVYAEEARAAEKLDAKLKIEAHWLERGVTARRKRNQGRLAKLWEMRAQRAAMQGPQGTA 267
           EA  A E  A    D +L  E  W+ +G+ ARR RN+GR+  L  +R +R   +  QG A
Sbjct: 243 EAALAAEETANALFDKRLAQEEVWIRQGIKARRTRNEGRVRALKALRVERGERRERQGKA 302

Query: 268 KIAVASDDSKTKSVIKAEHVTKTFGDRTI-INDFSLRVQRGDRIGIVGGNGAGKSTLLKL 326
            I + + D   K V+  E+V+    D  + + DFS+ +QR DRIG++G NG GK+TLLK+
Sbjct: 303 NIQIEAADKSGKQVMVLENVSFHHADGPLLVKDFSMVLQRQDRIGLLGANGTGKTTLLKM 362

Query: 327 LTGELAPDSGAVTLAKTLDMIFIDQQRSLMQGDKSVRDVLAEGGDWIDVRGVRKHVHGYL 386
           + G+L P +G V     L++ + DQ R  +  +K+V D LAEG D+I++ G  +HV  YL
Sbjct: 363 MLGDLEPTAGKVERGTKLEVAYFDQMRHQLDLEKTVIDNLAEGRDFIEIDGQNRHVLSYL 422

Query: 387 KDFLFDPSLAEAKVGTLSGGERSRLLFAREFARESNLLVLDEPTNDLDLETLDLLQEVIA 446
            DFLF P  A   V  LSGGER+RLL A+ F++ +NLLVLDEPTNDLD+ETL+LL+EV++
Sbjct: 423 GDFLFSPQRARTPVKALSGGERARLLLAKLFSKPANLLVLDEPTNDLDVETLELLEEVLS 482

Query: 447 DYDGTVLIVSHDRDFLDRTVTVTLGLDGSGKVDVIVGGYADWIAK--------------- 491
           +Y GTVL+VSHDR FLD  VT TL  +G GKV   VGGY DWI +               
Sbjct: 483 NYKGTVLMVSHDRAFLDNVVTSTLVFEGEGKVREYVGGYEDWIRQGGSPKLLGVTESKGG 542

Query: 492 RDPRRAPKAEKKEA-----AAPPPPKPASTKLTYKDQRDLDLLPKKIEELEAAIARDEEA 546
           +    +   EK EA     AAP     +  KL+YK QR+L++LP +I+ELE  +A  +E 
Sbjct: 543 KSALNSAVVEKVEAKPEPVAAPVVEDASKKKLSYKLQRELEMLPGQIDELEQRMAEAQEE 602

Query: 547 LADPALYTRDPKKFAALTAAIEKVRAEKDAAEERWLEL 584
           +     Y R   + +A+ A IEK++ E D   ERW EL
Sbjct: 603 VNAAGFYQRPIAETSAVLARIEKLQGELDVLVERWAEL 640



 Score =  107 bits (267), Expect = 2e-27
 Identities = 74/244 (30%), Positives = 128/244 (52%), Gaps = 32/244 (13%)

Query: 280 SVIKAEHVTKTFGDRTIINDFSLRVQRGDRIGIVGGNGAGKSTLLKLLTGELAPDSGAVT 339
           +++K   V+  FG   +++  S ++ RG+R+ I+G NG GKS++L+L+ GE   D G + 
Sbjct: 2   TLLKFSDVSLAFGAMPLLDKVSWQIARGERVCIIGRNGTGKSSMLRLVKGEQKGDDGEIW 61

Query: 340 LAKTLDMIFIDQQRSLMQGDKSVRDVLAEGGDWI------------DVRG---VRKHVH- 383
            A  L +  + Q+  +   +++V DV+A G D +            +++G   + K +H 
Sbjct: 62  RAPGLKIGELPQELPVAD-ERTVFDVVAAGLDGVGELLAQFHHLSMNIQGDEDLEKLMHV 120

Query: 384 --------GYLKDFLFDPSL------AEAKVGTLSGGERSRLLFAREFARESNLLVLDEP 429
                   G+    + + +L      A+  +  LSGG R R+L A+    E +LL+LDEP
Sbjct: 121 QHELEARDGWRLQQVVESTLSRLQLPADKTLAELSGGWRRRVLLAQALVSEPDLLLLDEP 180

Query: 430 TNDLDLETLDLLQEVIADYDGTVLIVSHDRDFLDRTVTVTLGLDGSGKVDVIVGGYADWI 489
           TN LD+  +  L+E +  ++G VL ++HDR FL    T  L LD  G +D   G YA ++
Sbjct: 181 TNHLDIGAIAWLEEALRGFNGAVLFITHDRSFLQNLATRILELDRGGLID-WNGDYASFL 239

Query: 490 AKRD 493
             ++
Sbjct: 240 VHKE 243