Pairwise Alignments

Query, 201 a.a., RNA polymerase ECF-type sigma factor from Sphingobium sp. HT1-2

Subject, 191 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 60.1 bits (144), Expect = 3e-14
 Identities = 49/165 (29%), Positives = 76/165 (46%), Gaps = 7/165 (4%)

Query: 11  FKTVILPQEAALRGRLRRILPSTHELEDMVAEVLARAYATENWENVTTGRAYLFTIARNL 70
           F  V   Q A +   + R +       D+V E+  R +     + V     YL   A NL
Sbjct: 21  FVQVFQAQRARMEALVSRRVGCRATASDLVQELFLRFWRRPEVK-VEALDTYLLRCAGNL 79

Query: 71  VIDTARRNKVVSFETIADLELLGGENTI----EAQLHAREALRQVEAIVDSLPTQCRRVF 126
            ID  R     S E +A+  +   E ++    E  +     L+++EA + +LP + R++F
Sbjct: 80  AIDHLRSES--SRERVAEAAVPVSEASLAQAPEQAVEVDHDLQRIEATLRALPERTRQIF 137

Query: 127 ILRRIHEKSMLEIAEEMSLSVSTVEKHLAKAIGIVMRAWAEREET 171
           +L RIH     EIA+ M LS S VEKH+ +A+     + AE   T
Sbjct: 138 LLNRIHGCKYSEIAKAMQLSQSAVEKHMMRALEACKASVAEPAST 182