Pairwise Alignments

Query, 201 a.a., RNA polymerase ECF-type sigma factor from Sphingobium sp. HT1-2

Subject, 158 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 65.5 bits (158), Expect = 5e-16
 Identities = 50/143 (34%), Positives = 67/143 (46%), Gaps = 9/143 (6%)

Query: 30  LPSTHELEDMVAEVLARAYATENWENVTTGRAYLFTIARNLVIDTARRNKVVSFETI--- 86
           L S    ED+  +   R       E +   RA+L+  A NLV+D  RR  V   E +   
Sbjct: 16  LGSRQAAEDVAHDAYLRVLERTGSEQIEHPRAFLYRTALNLVVDRHRRQLVRQAEPLDAL 75

Query: 87  -ADLELLGGENTIEAQLHAREALRQVEAIVDSLPTQCRRVFILRRIHEKSMLEIAEEMSL 145
            AD  L   E   + QL  R AL Q    +D L   CR  F+LR+I   S  +IAE + +
Sbjct: 76  DADSRLHSSELQHDLQLDQRLALMQ--KALDELSRPCRDSFLLRKIEGLSHQQIAERLGI 133

Query: 146 SVSTVEKHLAKAI---GIVMRAW 165
           S S VEKH+  A+    + MR W
Sbjct: 134 SRSLVEKHIVNAMKHCRVRMRQW 156