Pairwise Alignments

Query, 201 a.a., RNA polymerase ECF-type sigma factor from Sphingobium sp. HT1-2

Subject, 170 a.a., RNA polymerase subunit sigma-24 from Pseudomonas putida KT2440

 Score = 68.9 bits (167), Expect = 5e-17
 Identities = 45/158 (28%), Positives = 77/158 (48%), Gaps = 6/158 (3%)

Query: 11  FKTVILPQEAALRGRLRRILPSTHELEDMVAEVLARAYATENWENVTTGRAYLFTIARNL 70
           F +V L Q   L   L+R++ +    ED++ E   R         +     ++F  ARNL
Sbjct: 6   FNSVFLVQRLTLLRTLQRMVGNPSTAEDLLQETYLRVSRALGERPIEHIEPFVFQTARNL 65

Query: 71  VIDTARRNKVVSFETIADL------ELLGGENTIEAQLHAREALRQVEAIVDSLPTQCRR 124
            +D  R  +V +   + D+       +     + E   HA + L+ +   ++ L  + +R
Sbjct: 66  ALDHLRARRVQARMLVDDVPDEVLHSVAAPATSSEDAAHAEQLLKHLSVSLNQLSERQQR 125

Query: 125 VFILRRIHEKSMLEIAEEMSLSVSTVEKHLAKAIGIVM 162
           +FIL R+H  + LEIAE++S+S STV+K L   + I M
Sbjct: 126 IFILSRLHGATYLEIAEQLSVSPSTVQKELKLIMAICM 163