Pairwise Alignments

Query, 201 a.a., RNA polymerase ECF-type sigma factor from Sphingobium sp. HT1-2

Subject, 171 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 57.8 bits (138), Expect = 1e-13
 Identities = 40/143 (27%), Positives = 71/143 (49%), Gaps = 1/143 (0%)

Query: 22  LRGRLRRILPSTHELEDMVAEVLARAYATENWENVTTGRAYLFTIARNLVIDTARRNKVV 81
           LRG LR  +  +    D+  +   R         +   RAYL +IAR L+ID  RR  + 
Sbjct: 23  LRGWLRSRVGCSEHAADLAQDTFVRLLRARQMSPLKEPRAYLSSIARGLMIDQFRRRALE 82

Query: 82  SFETIADLELLGGE-NTIEAQLHAREALRQVEAIVDSLPTQCRRVFILRRIHEKSMLEIA 140
                    L   E  + E +L   ++L +++  +  L  + R+ F+L ++   S++++A
Sbjct: 83  RAYQEGLAHLPEAEVPSEEDKLVILDSLERLDRALQQLKPRVRQAFLLAQLDGLSIVQVA 142

Query: 141 EEMSLSVSTVEKHLAKAIGIVMR 163
           + + +S +TVE+ LAKA+G   R
Sbjct: 143 QRLGVSRATVERDLAKALGACYR 165