Pairwise Alignments

Query, 472 a.a., Efflux transport system, outer membrane factor (OMF) lipoprotein from Sphingobium sp. HT1-2

Subject, 496 a.a., RND efflux transporter, outer membrane protein from Pseudomonas putida KT2440

 Score =  209 bits (533), Expect = 1e-58
 Identities = 144/476 (30%), Positives = 234/476 (49%), Gaps = 17/476 (3%)

Query: 3   RNIKAMSVASLALTLAACDMAPKYARPELPVPQASPQGPAYAAAVEGGAAIVPADT---- 58
           R  + +        L+AC ++P Y RPEL    A  +        EG     P+D     
Sbjct: 19  RGSRLLGAGLCVALLSACTLSPDYHRPELNSTAAQFKH------AEGWTQASPSDAIARG 72

Query: 59  AWRDFFTDPRLVRVIETSLANNRDLRIAVANVEQARAQYKVQRADLLPTVGATGTATYSE 118
           AW + + D  L  ++E    +N+ +  + A   QA+A  +  RA L P++  + +   S 
Sbjct: 73  AWWEIYGDAGLNALVEELNRSNQTVAQSEAQYRQAQALVRSSRAALFPSLDLSTSKNRSA 132

Query: 119 QPLVQFGQSQRLNT----DVYQAQVGISAWEIDLFGRVRNLTKAAQEQYFASVENRNAAQ 174
           Q       S   N+    + Y AQ+G+S WEIDL+G++R    A +    AS  +  + +
Sbjct: 133 QGTGSSSSSLSNNSSGIRNTYNAQLGVS-WEIDLWGKLRETLNANEASAEASFADLASIR 191

Query: 175 TALVAEVATAWVNMAADQELLSIARTLATAFKETLDLNKARFDKGIASELEVREAQTSYD 234
            +  +E+   ++ +    E   +      A++ +L +N+ ++  G+A    V +A+T   
Sbjct: 192 LSQQSELVQNYLQLRVIDEQKRLLEATVAAYERSLRMNENQYRAGVAGPDAVAQARTQLK 251

Query: 235 QARAAIASATTLVAQDQNALNLLAGTTLGSEDLPSALPEGHVTLDNLPAELPSTLLLRRP 294
             +A +       AQ +NA+ +L G      D   A  +    L  +P  LPS LL RRP
Sbjct: 252 STQADLIDLIWQRAQFENAIAVLLGKA--PADFALADSKAIPALPQIPVSLPSQLLERRP 309

Query: 295 DIASAEHQLIAANANIGAARAAFFPQLSLTAALGTVSLGLSGLFKSGSDTWSVAPSATLP 354
           DIA+AE  ++AANANIG +RAA+FP LSL+ + G  S   S   +  +  WSV P   L 
Sbjct: 310 DIAAAERNVMAANANIGVSRAAYFPDLSLSMSGGYSSSSFSNWIELPNRYWSVGPQLALT 369

Query: 355 IFDFGRNKGNLRYARATYDAMLATYEKSVQTGFREVADALARRGTMTDQVEAQTSQRDAA 414
           +FD G+    +    A YD  +A Y ++V  GFREV + L +     D+   +    DAA
Sbjct: 370 LFDAGKRSAEVDRTVAVYDQTVAQYRQTVLDGFREVENLLVQLKVYGDEAVVRQEALDAA 429

Query: 415 RKAYDLTQARFRAGVDGFLPTLVSQRTLSSAEQSLVSTRLARLTNMIELYRAMGGG 470
           R++  LT+ ++RAG+ G+L  +  Q T  S E+S+++    RL   ++L  A+GGG
Sbjct: 430 RESLRLTENQYRAGLIGYLDVVNVQTTALSNERSVLNLLQGRLVASVQLVAALGGG 485