Pairwise Alignments

Query, 479 a.a., ATP-dependent RNA helicase RhlE (EC 3.6.4.13) from Sphingobium sp. HT1-2

Subject, 570 a.a., ATP-dependent RNA helicase RhlE from Xanthobacter sp. DMC5

 Score =  453 bits (1166), Expect = e-132
 Identities = 260/509 (51%), Positives = 322/509 (63%), Gaps = 41/509 (8%)

Query: 3   FNELGLSEPIIKALTAKKYAEPTPIQQKAIPVLLEGRDLCGIAQTGTGKTAAFALPSLDY 62
           F+ LGL+EPI++ALT   +  PTPIQ +AIP +L GRDL GIAQTGTGKTAAFALP LD 
Sbjct: 28  FSSLGLAEPIVRALTEANHVTPTPIQAEAIPQVLAGRDLIGIAQTGTGKTAAFALPILDR 87

Query: 63  FARNPKPTPIKGCRMLVLSPTRELAAQIAQSFRDYGRFLRLSVETVFGGVPVNKQIRALS 122
             R+P+    K  R LVLSPTREL+ QI  +F  +GR  R+SV    GGVP+ +QIRAL+
Sbjct: 88  LVRHPRRPDPKSVRALVLSPTRELSGQIVDNFEKFGRHARISVTLAIGGVPMGRQIRALA 147

Query: 123 AGVDIVVATPGRLLDLIDQRAFTIKDTEIFVLDEADQMMDMGFIHPLKRIAKLLPRDRQN 182
            GVD++VATPGRL+DL++  A  +   E+ VLDEADQM+DMGF+H ++ I + LP  R +
Sbjct: 148 RGVDVLVATPGRLMDLVENHAVKLDQVEVLVLDEADQMLDMGFVHAIRAIVRRLPHKRHS 207

Query: 183 LFFSATMPKEIEALAGQFLNDPVKVSVAPQSTTAERVRQQLTFVNQAEKQALLHIVLKTE 242
           LFFSATMP  I  LAG  L+DPV+V+V P + TA+RV Q++  V++  K  LL  VL TE
Sbjct: 208 LFFSATMPPAIAELAGGMLHDPVRVAVTPVAKTADRVEQRVIHVDKPNKGQLLAEVLSTE 267

Query: 243 EIDRALIFTRTKHGADRVVRFLEGAGIQAFAIHGNKSQAQRTTALQAFRHGHCKLLVATD 302
           EIDRAL+F RTKHGAD+VVR L   GI A AIHGNKSQ QR   L AFR G  + L+ATD
Sbjct: 268 EIDRALVFARTKHGADKVVRVLAKCGIAAEAIHGNKSQNQRDRVLLAFREGKIRTLIATD 327

Query: 303 IAARGIDVSGVSHVINFEIPNVPEQYVHRIGRTARAGADGIAISFVADDERPYLKAIERA 362
           IAARGIDV+GVSHVIN+++PNVPE YVHRIGRTARAG +GIAISF   +ER YLK+IER 
Sbjct: 328 IAARGIDVTGVSHVINYDLPNVPESYVHRIGRTARAGREGIAISFCDHEERAYLKSIERL 387

Query: 363 TKVK---------------PEIVP--LPENFLEAVRN----LPKPAPQRRGPSQSPAQ-- 399
            K++               P+  P  L E    A RN         P +RGP +S     
Sbjct: 388 IKLQIPATDRRGAGMRFAIPDAPPIELEERDETAERNDFIGGRGGRPGQRGPQRSRGPRP 447

Query: 400 --------QAKRAEGQRRYQ--------EGQKAQRGAPDKARRGEGGHRGEGAHRGEG-- 441
                   Q +RAEG+ + +        EG+ A+   P   R  EG    +GA  G G  
Sbjct: 448 EGREGGRGQGQRAEGREQREPRGERPAGEGRPARAAQPRPERAPEGHRNAQGAGNGAGRR 507

Query: 442 DGAGAKKNFRRRRGGGGGGGGAVGTHKGA 470
           DG       R  R  G G GG  G  +GA
Sbjct: 508 DGQNRSGEGRGARPQGEGRGGERGGDRGA 536



 Score = 27.3 bits (59), Expect = 0.001
 Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 3/61 (4%)

Query: 385 KPAPQRRGPSQSPAQQAKRAEGQRRYQEGQKAQRGAPDKARRGEGGHRG--EGAHRGEGD 442
           +P P+R       AQ A    G+R  Q      RGA  +   G GG RG   GA  G   
Sbjct: 484 QPRPERAPEGHRNAQGAGNGAGRRDGQNRSGEGRGARPQG-EGRGGERGGDRGARPGNDL 542

Query: 443 G 443
           G
Sbjct: 543 G 543