Pairwise Alignments

Query, 479 a.a., ATP-dependent RNA helicase RhlE (EC 3.6.4.13) from Sphingobium sp. HT1-2

Subject, 416 a.a., Superfamily II DNA and RNA helicases from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  362 bits (928), Expect = e-104
 Identities = 197/423 (46%), Positives = 274/423 (64%), Gaps = 16/423 (3%)

Query: 1   MHFNELGLSEPIIKALTAKKYAEPTPIQQKAIPVLLEGRDLCGIAQTGTGKTAAFALPSL 60
           M F +L +  PI+KAL  K Y EPT IQ +AIP +LEGRD+ G AQTGTGKTAAFA+P +
Sbjct: 1   MKFKDLRIIPPILKALEDKGYDEPTSIQAQAIPHILEGRDVLGCAQTGTGKTAAFAIPII 60

Query: 61  DYFARNPKPT-PIKGCRMLVLSPTRELAAQIAQSFRDYGRFLRLSVETVFGGVPVNKQIR 119
            +    P    P    R L+++PTRELA QI ++  +Y +   +S   +FGGV    Q+ 
Sbjct: 61  QHIHEAPYANEPWAKIRSLIVTPTRELAIQIGENIDEYAKNTNVSHTVIFGGVKQGAQVA 120

Query: 120 ALSAGVDIVVATPGRLLDLIDQRAFTIKDTEIFVLDEADQMMDMGFIHPLKRIAKLLPRD 179
            L  GV I+VATPGRLLDLIDQ   ++K  ++FVLDEAD+M+DMGFI+ +K++ K+LP+ 
Sbjct: 121 QLKKGVHILVATPGRLLDLIDQGHISLKAIDLFVLDEADRMLDMGFINDIKKLLKILPKK 180

Query: 180 RQNLFFSATMPKEIEALAGQFLNDPVKVSVAPQSTTAERVRQQLTFVNQAEKQALLHIVL 239
           RQ+LFFSATMP  I  L+ + L++P KV V P S+TAE ++Q + + N++ K++LL  +L
Sbjct: 181 RQSLFFSATMPDNILQLSKEILDNPQKVEVTPVSSTAETIQQYIYYTNKSSKKSLLIHIL 240

Query: 240 KTEEIDRALIFTRTKHGADRVVRFLEGAGIQAFAIHGNKSQAQRTTALQAFRHGHCKLLV 299
           + E +D+ L+F+RTKHGADR+VR L+   I+A AIHG+K+Q QR   L  F+    ++LV
Sbjct: 241 EKEGMDQVLLFSRTKHGADRIVRDLKKKHIKAAAIHGDKAQNQRQRVLSDFKDNKLRVLV 300

Query: 300 ATDIAARGIDVSGVSHVINFEIPNVPEQYVHRIGRTARAGADGIAISFVADDERPYLKAI 359
           ATDIAARGID+  + +VINF+IP+ PE Y+HRIGR+ RAG +G AIS    +E   +KAI
Sbjct: 301 ATDIAARGIDIDKLKYVINFDIPDTPETYIHRIGRSGRAGEEGTAISLCEPEENADVKAI 360

Query: 360 ERATKVKPEIVPLPENFLEAVRNLPKPAPQRRGPSQSPAQQAKRAEGQRRYQE---GQKA 416
           E+       ++               P PQ   P  +  ++    E QRR QE    +K 
Sbjct: 361 EKLANKNITVIS------------DHPFPQTDKPMTAQEKKEFNKEKQRRKQEFFANRKK 408

Query: 417 QRG 419
            RG
Sbjct: 409 NRG 411