Pairwise Alignments

Query, 356 a.a., RND efflux system, membrane fusion protein from Sphingobium sp. HT1-2

Subject, 472 a.a., HlyD family secretion protein from Pseudomonas putida KT2440

 Score = 50.8 bits (120), Expect = 7e-11
 Identities = 42/161 (26%), Positives = 78/161 (48%), Gaps = 8/161 (4%)

Query: 113 VEAQIAAVQQARATAMIDVNRTSQLYAEGLAA--RRDYEQTQIKVADVDAKLAEARAKLK 170
           +E + A ++Q R  A+   +R  +L A  LAA  RR     Q++ A +D    EA+ ++ 
Sbjct: 249 LEKEQARLEQERELAL-QRSRIDELNAARLAAQHRRSGAIAQLRRAMLDLH-GEAQRRIA 306

Query: 171 QIEIKLAQSSAQ----IVSAPREGRVQDLNAAAGGALISSGTVLATIAPENITRAVELYV 226
            +E +L ++  +    ++++P +G VQ L     G +++    L  I P      VE+ V
Sbjct: 307 TLEQELNKAEQRHRLKVLTSPVDGTVQQLAIHTQGGVVTPAQTLMVIVPTGEPVEVEVKV 366

Query: 227 DGRDVPLVEPGRSVRLEFEGFPAFQFSGWPAFAVGIYDGQV 267
           + +D+  V PG+ V ++ E F   ++   P     I D  +
Sbjct: 367 ENKDIGFVFPGQHVEVKIETFTFTRYGVVPGVVESISDDAI 407