Pairwise Alignments

Query, 262 a.a., Flagellar biosynthesis protein FliP from Sphingobium sp. HT1-2

Subject, 217 a.a., type III secretion system protein SsaR from Pseudomonas simiae WCS417

 Score =  137 bits (344), Expect = 2e-37
 Identities = 79/208 (37%), Positives = 125/208 (60%), Gaps = 6/208 (2%)

Query: 59  LQILVLMSLLSVLPSLILMMTSFTRIIIVLSLLRQALGLQQTPPNQVLVGLALFLSLFVM 118
           L + + +  L+++P L+++ TSF +I+IVL + R A+G+QQ PP+  + G+AL  +LF+M
Sbjct: 9   LILALFVGALALMPMLLIICTSFLKIVIVLMITRNAIGVQQVPPSMAVNGIALAATLFIM 68

Query: 119 RPVIDQI-NGQAYDPYGKGQISIEEAIGRSG-KVLHGFMAKQTRESDLK-LFANMAEAPA 175
            PV  +I  G    P     +      GR   + L  FM +      L  L  N A    
Sbjct: 69  APVGYEIAEGIKASPVDTSSVINFLQTGREAIQPLRAFMLRNVDPDVLTHLLENTARLWP 128

Query: 176 FRTPDDIP---FTILLPAFVTSELKTAFQIGFMIFLPFLIIDLVVASTLMALGMMMLSPT 232
            +   ++      +L+PAFV S+L+  F+IGF+I++PF++IDL+V++ L+ALGM M+SP 
Sbjct: 129 AKMAQEVQREDLILLVPAFVLSQLQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPM 188

Query: 233 IISMPFKLLLFVLVDGWALTMGSLAGSF 260
            IS+P KLLLFV+V GW+  + SL  S+
Sbjct: 189 TISLPLKLLLFVMVSGWSRLLDSLFLSY 216