Pairwise Alignments

Query, 294 a.a., Flagellar motor switch protein FliM from Sphingobium sp. HT1-2

Subject, 322 a.a., flagellar synthesis, switching and energizing component from Pseudomonas putida KT2440

 Score =  103 bits (256), Expect = 7e-27
 Identities = 66/263 (25%), Positives = 118/263 (44%), Gaps = 1/263 (0%)

Query: 23  LDRLGEKLGRRIRALIEPISGIRPHVVAEDARVVEFGAWSAGAPNFCSLSIYRLLPLKGQ 82
           L+ + E+  R  R  +  +      V     +V++FG +        SL++ ++ PL+G 
Sbjct: 54  LEMINERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKPLRGT 113

Query: 83  MLLCMDATMISTLVDCFYGGLGNRALPARGEFTPTEDRLIARLSETIMARMVECWSEVLP 142
            L  +DA ++  LVD F+GG G  A     EFTPTE R++  + +     + E W  ++P
Sbjct: 114 SLFILDAKLVFKLVDNFFGGDGRHAKIEGREFTPTELRVVRMVLDQCFVDLKEAWQAIMP 173

Query: 143 LEPGLLLRETGIGFAAAAQPADQMVVQRFRVGLDRDREWSIDMVFPLAALRGVEALMGSK 202
           +    +  E     A    P++ +VV  F + LD      + +  P + +  V  ++ + 
Sbjct: 174 VSFEYMNSEVNPAMANIVGPSEAVVVSTFHIELD-GGGGDLHVTMPYSMIEPVREMLDAG 232

Query: 203 VASDDEHVDPVWQARVARRMRDIRLPARTVLARPNLSLAELMQLKAGDIIPVTIGRSLPL 262
             SD +  D  W   +   + D+ +P    +AR  L L +++ ++ GD+IPV +   L L
Sbjct: 233 FQSDLDDQDERWVKALREDVLDVAVPMTATVARRQLKLRDILHMQPGDVIPVELPEHLVL 292

Query: 263 IVGDRIVAHGTIGEQDGRAAFQI 285
                      +G   G  A QI
Sbjct: 293 RANGVPAFKARLGSHKGNLALQI 315