Pairwise Alignments

Query, 245 a.a., RNA polymerase sigma factor for flagellar operon from Sphingobium sp. HT1-2

Subject, 246 a.a., RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons from Pseudomonas putida KT2440

 Score =  139 bits (350), Expect = 5e-38
 Identities = 81/236 (34%), Positives = 131/236 (55%), Gaps = 7/236 (2%)

Query: 15  YGRAGLANSPEQLARRYMPLVRKIAWHVHGRVSSAIEVEDLLQIGMVALVESANSFE-DR 73
           Y RA   ++  +L  RY PLV++IA+H+  R+ + ++VEDL+Q GM+ L+E AN ++  +
Sbjct: 9   YSRAA-KDAQYELIERYAPLVKRIAYHLLARLPANVQVEDLIQAGMIGLLEVANKYDASK 67

Query: 74  GLGFASYAQLRVRGAMIDHLRRHSTLCRSAMATRKKLAATRAKLEQKLGRAPLEAEMAAE 133
           G  F +YA +R+RGAM+D +R+     RS     + ++     +E + GR   + E+AAE
Sbjct: 68  GASFETYAGIRIRGAMLDEVRKGDWAPRSVHRNTRMVSDAMRAVEARTGRDAKDHEVAAE 127

Query: 134 LGMDAADYREAADGAEMVQHTSIDEVYSDQSMWFADVEDRADDI-----MERESLKGALA 188
           L +   DY    +     +  S D++  D        +  +  +     +E E  + AL 
Sbjct: 128 LQLSLDDYYGILNDTLGSRLFSFDDLLQDGEHEGLHEDGASGQVEPARGLEEERFQAALT 187

Query: 189 KCIGELPEREALVLQLYFVEELNLEEIGQTLDIGAARVCQIKKSALDKLRGKLIDW 244
           + I  LPERE LVL LY+ EELNL+EIG+ L +  +RV Q+      +LR +L +W
Sbjct: 188 EAIANLPERERLVLALYYDEELNLKEIGEVLGVSESRVSQLHSQCAARLRSRLGEW 243