Pairwise Alignments

Query, 1158 a.a., Transcription-repair coupling factor from Sphingobium sp. HT1-2

Subject, 1149 a.a., transcription-repair coupling factor from Pseudomonas putida KT2440

 Score =  761 bits (1965), Expect = 0.0
 Identities = 443/1104 (40%), Positives = 645/1104 (58%), Gaps = 24/1104 (2%)

Query: 22   GFQPWLLADIARAAHGSDATR-AVFVASDEQLMRAVAETAHYFAPEIELIEIPAWDCLPY 80
            G  P     +A A   S A R  + + +D Q    + +   +FAP++ ++  P W+ LPY
Sbjct: 19   GNLPGAALSLAIAEAASSAGRFTLLLTADSQAADRLEQELRFFAPDLPVLPFPDWETLPY 78

Query: 81   DRASPSLRTASARLAGLHALQAKPKGPQLVLTTLNALTQRTLTPFRVRQLVARLAPKERI 140
            D  SP     S R+A L+ L     G  LV+    AL +   T F +   +  L   + I
Sbjct: 79   DLFSPHQDIISQRIASLYRLPELSHGI-LVVPITTALHRLAPTRFLLGSSLV-LDVGQTI 136

Query: 141  AITRLADMLQSNGYVRTDTVHDRGEFAIRGGIVDLFPGGEEQPLRLDFFGDEIETVRRFD 200
             + ++   L+++GY   DTV++ GEFA+RG ++DLFP G + P R+D F +EIET+R FD
Sbjct: 137  DVEQMRLRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPYRIDLFDNEIETLRTFD 196

Query: 201  PTDQRTTGSVDGFTLLPASEALLDEDTIKRFRGRYRETFGATATGDPLYQAVSEGRRLAG 260
            P  QR+   VD   LLPA E  + ++ + RF+ R+RE F        ++Q ++ G   AG
Sbjct: 197  PETQRSIDKVDSVRLLPAREFPMQKEEVTRFKARFRERFDVDFRRSAIFQDLASGIIPAG 256

Query: 261  MEHWLPLFEEKLVPLTDHLGDDAIIVRDHGVVGAADARFEAIRDYHANRIAAKSADPGAY 320
            +E++LPLF E+   L D+L  D  +    GV  AA+  +  +R  + +R    S      
Sbjct: 257  IEYYLPLFFEETSTLFDYLPTDTQVFSLPGVEQAAEHFWNDVRGRYEDRRGDLS------ 310

Query: 321  RPLKPEA-LYLDAAEWDASAAVWPMHATTPFHEPESATVLDFAVDGPRDFAPERAQNVNV 379
            RPL P A L+L   +  A    WP    +            F    P    P  A     
Sbjct: 311  RPLLPPAELFLPVEDCFARLKQWPRVVVSSEELEPGVGRERF----PARALPNLAIEAKA 366

Query: 380  YEAVGKHIDALRRTKKKVVIASYSAGARERLSGLLADHGVARLAAADSWQEALGTAAGGS 439
             + + +  + L +   +V+  + SAG RE L  LL +    R    + W + +  A    
Sbjct: 367  NQPLAELANFLDQFPGRVLFTAESAGRREVLLELL-ERLKLRPHTVEGWDDFITGAE--R 423

Query: 440  AVLTVLGLDHGFTA--PDVAVLTEQDMLGDRLVRRAKRKKSA----DAFLAELATLSPGD 493
              +T+  LD G     P +A++ E  + G R+++R +R K      DA +  L  L  G 
Sbjct: 424  LAITIAPLDDGLLLDDPGLALIAESPLFGQRVMQRRRRDKRGETANDAVIKNLTELREGA 483

Query: 494  LVVHMDHGIGRYEGLTQIPVSKTAHDCVALSYAGGDKLYVPVENLEVLSRY-GSDSEGVS 552
             VVH+DHG+GRY GL  + +   A + + L YA   KLYVPV NL +++RY GSD     
Sbjct: 484  PVVHIDHGVGRYLGLATLEIDGQAAEFLTLEYAENAKLYVPVANLHLIARYTGSDDALAP 543

Query: 553  LDKLGGEAWQRRKARMKERIREIAGELLKTAAERALRPAEIAEPDAAGYPAFVDRFPYQE 612
            L +LG EAWQ+ K +  E++R++A ELL   A RA R        +A Y  F   FP++E
Sbjct: 544  LHRLGSEAWQKAKRKAAEQVRDVAAELLDIYARRAARKGYAFADPSADYATFSAGFPFEE 603

Query: 613  TDDQDRAIGDVIEDLGAGRPMDRLVCGDVGFGKTEVALRAAFVAAMAGMQVVVICPTTLL 672
            T DQ  AI  V  D+ A +PMDRLVCGDVGFGKTEVA+RAAF+A  +G QV V+ PTTLL
Sbjct: 604  TPDQQAAIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHSGRQVAVLVPTTLL 663

Query: 673  ARQHHMNFVERFRGFPLEIARLSRLVPDKEAKATKAGLADGTIDIVVGTHALLAKGLEFK 732
            A+QH+ +F +RF  +P+ +  +SR    KE  A  A LA+G IDI++GTH LL   + FK
Sbjct: 664  AQQHYNSFRDRFADWPVTVEVMSRFKSAKEVAAAAADLAEGKIDILIGTHKLLQDDVRFK 723

Query: 733  RLGLVIVDEEQRFGVTHKERLKSLKTDVHVLTLTATPIPRTLQMAMSGLRELSVIQTPPV 792
             LGL I+DEE RFGV  KE+LK+L+++V +LTLTATPIPRTL MA++G+R+LS+I TPP 
Sbjct: 724  DLGLAIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSIIATPPA 783

Query: 793  DRLAVRTYIMPWDGVVIREALLREHYRGGQSFFVVPRISDLTEVEEFLRTEVPEVKPIVA 852
             RL+VRT++M  +   ++EALLRE  RGGQ +++   +  + +    L   VPE +  + 
Sbjct: 784  RRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARIGIG 843

Query: 853  HGQMSATDVEERMSAFYDKRYDVLLSTTIVESGLDIPSANTLIIHRADRFGLAQLYQLRG 912
            HGQM   ++E+ MS FY KR++VL+++TI+E+G+D+PSANT++I RAD+FGLAQL+QLRG
Sbjct: 844  HGQMRERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIVIERADKFGLAQLHQLRG 903

Query: 913  RVGRSKTRAYAYFTTPANRIITETAEKRLKVLSDLDTLGAGFQLASHDLDIRGAGNLVGD 972
            RVGRS  +AYAY  TP  + ++  AEKRL+ +++   LGAGF LA++DL+IRGAG L+G+
Sbjct: 904  RVGRSHHQAYAYLLTPTRQKVSADAEKRLEAIANTQDLGAGFVLATNDLEIRGAGELLGE 963

Query: 973  EQSGHIKEVGFELYQSMLEDAIMDAKAGGAGLEARRDSFSPQISVDAPIMIPEEFVPDLD 1032
             QSG I+ VGF LY  MLE A+   + G      +     P+I++  P +IPE+++PD+ 
Sbjct: 964  GQSGQIQAVGFTLYMEMLERAVKAIRKGTQPNLEQPLGGGPEINLRLPALIPEDYLPDVH 1023

Query: 1033 LRMGLYRRINELEDRQGLEAFAAELIDRFGKLPAPTQNLLKIIEIKQNCLKANIAKIDVG 1092
             R+ LY+RI    D +GL+    E+IDRFG LP PT+NL+++  +K +  K  I K+D G
Sbjct: 1024 ARLILYKRIASAADEEGLKDLQVEMIDRFGLLPEPTKNLMRLTSLKLHAEKLGIKKVDAG 1083

Query: 1093 PKGALVSFFEDRFPSPAGLVAYVQ 1116
            P G  + F  +    P  L+  +Q
Sbjct: 1084 PNGGKLEFEAETPVDPLTLIKLIQ 1107