Pairwise Alignments

Query, 804 a.a., '3'-to-5' exoribonuclease RNase R' transl_table=11 from Sphingobium sp. HT1-2

Subject, 742 a.a., ribonuclease R from Magnetospirillum magneticum AMB-1

 Score =  558 bits (1437), Expect = e-163
 Identities = 325/780 (41%), Positives = 453/780 (58%), Gaps = 67/780 (8%)

Query: 23  PTRQQVMDFITESDTPAGKREIAKAFGLKGQEKIALKALLKDMADEGLLDIGPARAFHKM 82
           P++Q+++DFI       GKRE+A+AF L+G +KI LKA+LK++  EG+++ G  R F   
Sbjct: 10  PSKQEILDFIRSQPGRVGKRELARAFNLRGSDKIDLKAILKELEREGVVERGQKRRFASP 69

Query: 83  GGVPKVTVLRIVDVD-DTTLIATPERWEAEGQPAPRIRVVE-RGKRGALTIGDRILARTE 140
           G +P V V+ I+  D D  L+A P  +E EG+P PRI +   R    A+ +GDR+LA+ +
Sbjct: 70  GTLPDVGVVEIIGTDSDGELLARPLNYEGEGRP-PRIFMAPFRAGEAAVGVGDRVLAKLK 128

Query: 141 EAGKG---WLAHPMKKLAKATEMLLGVVEEMADGKLWLRPVDKRIRKD--TPISDIGTAK 195
              +G   + A  ++ + +A   +LGV E   DG   LRP  ++ + +   P  + G AK
Sbjct: 129 RV-RGEDVYEARAIRIIGEARARVLGVFEPNPDGSGRLRPTSRKEKAEYMVPRGETGDAK 187

Query: 196 KGDLVLAEPTGRPPRI----SARVTDILGDPFAPRSFSLIAIHKHGIPHVFPEAVEEEAV 251
            G+LVLA+    P R+    +A V + +G   APRS SL+AIH + +P  FPEA  ++A 
Sbjct: 188 AGELVLADIM--PGRLYGMRTASVKERMGLLGAPRSVSLVAIHTNDVPFEFPEAALQQAA 245

Query: 252 TASKLPLHEDKREDLRHLPIVAIDPVDARDHDDAVWAAPDEDPTNEGGYKAIVAIADVSY 311
                P++E  R DLR +P+V ID  DARD DDAV+A PD DP N GG+  +VAIADVS+
Sbjct: 246 AEGPAPMNE--RTDLRSIPLVTIDGEDARDFDDAVFAEPDPDPKNPGGWHCMVAIADVSW 303

Query: 312 YVRPGSALDREARKRGNSVYFPDLVVPMLPHQLSSDMCSLRAGQDRAAMACHLVIDAQGK 371
           YVRPG +LD+EA KRGNSVYFPD VVPMLP +LS+  CSL+  +DR  MA H  +DA G 
Sbjct: 304 YVRPGDSLDKEAFKRGNSVYFPDRVVPMLPEELSNGWCSLKPDEDRPCMAVHFWLDALGN 363

Query: 372 VKSFRFSRAIIRVAAVLAYENAQAAIDALSSVRPEPVEGQGRAEGEAASPAAQQAASTSL 431
               RF R ++R  A L Y   QAA D     R  P                        
Sbjct: 364 KLHHRFVRGMMRSVARLTYTQVQAAKDGTPDDRTGP------------------------ 399

Query: 432 SPNGVDLVEHALKPLWACWALLRKAREKRDPLALDLPERRVVLDEWGKIVSVAVRERLDA 491
                 L+   ++PL+  WA L + R++R  L LD+PER+V +   GK+ ++  RER D+
Sbjct: 400 ------LLAPVIEPLYGAWAALFRERKERGVLELDIPERKVTITPEGKVEAITERERFDS 453

Query: 492 HMLIEDYMIAANVAAAKALEAKKAPVMYRVHETPGRDKLVALKEYLATFDIDFALGQVIR 551
           H LIED+MI ANV AA+ LE    P MYR+H+ P ++KL  L+E+L++ D+  A GQV+R
Sbjct: 454 HRLIEDFMIMANVCAAETLEKVHKPCMYRIHDLPSQEKLDGLREFLSSMDLKLAKGQVLR 513

Query: 552 PSTFNQLIKKVGESEEKEQIMTQILRSQTQAYYAPQNMGHFGLALGSYAHFTSPIRRYAD 611
           P+ FN++++ V  +     +   ILRSQ QA Y+P+N+GHFGL L  YAHFTSPIRRYAD
Sbjct: 514 PAHFNRILEAVEGTANSHLVSEVILRSQAQAQYSPENIGHFGLGLARYAHFTSPIRRYAD 573

Query: 612 LLVHRALVGAYDLELPAPKGKAIPDRSSLSQEDYENMGRVGEMISGHERRAMEAERETID 671
           LLVHRAL+    L               L  +        GE IS  ERRA  AERE +D
Sbjct: 574 LLVHRALISGLHL-----------GEGGLPADAVAEFAEWGEHISVTERRAATAEREAVD 622

Query: 672 RYVAAFLSAHVGEVVKARITGVQNFGFFATVEGLGGDGLVPVSTLGAEHFFFDEAGKALQ 731
           RYV AFL+  VG     +++GV  FG F T++  G DGLVP+STL  + +  DE    L 
Sbjct: 623 RYVTAFLADKVGATFAGKVSGVTRFGLFVTLDQTGADGLVPISTLPEDFYVHDEVHHCLV 682

Query: 732 GVESGDRYTVGQRLELRLAEADPINGALRFEL---------PDNPAPRGSPLKRDRTRPK 782
           G  +   + +GQ+L++ LAEA+ + G++ F L         P  P   G P +  R+R +
Sbjct: 683 GKRTRKTFQLGQKLDVELAEANTLTGSMVFRLGGAGERGLRPPRPPQSGRPKRSFRSRTR 742