Pairwise Alignments

Query, 804 a.a., '3'-to-5' exoribonuclease RNase R' transl_table=11 from Sphingobium sp. HT1-2

Subject, 644 a.a., exoribonuclease II from Enterobacter asburiae PDN3

 Score =  150 bits (378), Expect = 3e-40
 Identities = 156/604 (25%), Positives = 248/604 (41%), Gaps = 81/604 (13%)

Query: 132 GDRILARTEEAGKGWLAHPMKKLAKATEMLLGVVEEMADGKLWLRPVDKRIRKDTPISDI 191
           GDR++A          A P + +       +G V+   D +L + P    ++   P    
Sbjct: 57  GDRVMAVIHTEKDRESAEPEELIEPFLTRFVGKVQRK-DDRLAIVPDHPLLKDAIPCRAA 115

Query: 192 GTA----KKGDLVLAEPTGRPPR----ISARVTDIL---GDPFAPRSFSLIAIHKHGIPH 240
                  K+GD  +AE    P +      A +T  +    D F P     + + +H +  
Sbjct: 116 RGVEHDFKEGDWAVAEMRRHPLKGDRGFYAELTQFITFGADHFVPW---WVTLARHNLEK 172

Query: 241 VFPEAVEEEAVTASKLPLHEDKREDLRHLPIVAIDPVDARDHDDAVWAAPDEDPTNEGGY 300
             P  V      A+++      R DL  L  V ID     D DDA++A    D    G  
Sbjct: 173 EAPNGV------ATEMQDEGLTRRDLTALEFVTIDSASTEDMDDALYAEEGAD----GKL 222

Query: 301 KAIVAIADVSYYVRPGSALDREARKRGNSVYFPDLVVPMLPHQLSSDMCSLRAGQDRAAM 360
              VAIAD + ++  GS LD  A+ R  + Y P   +PMLP +LS D+CSLR  + R  +
Sbjct: 223 HLTVAIADPTAWIAEGSKLDDAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRPNEVRPVL 282

Query: 361 ACHLVIDAQGKVK-SFRFSRAIIRVAAVLAYENAQAAIDALSSVRPEPVEGQGRAEGEAA 419
           AC + I A G ++    F  A I   A LAY+N    ++   S +PE             
Sbjct: 283 ACRMTIAADGAIEDDIEFFAATIESKAKLAYDNVSDWLENTGSWKPES------------ 330

Query: 420 SPAAQQAASTSLSPNGVDLVEHALKPLWACWALLRKAREKRDPLALDLPERRVVLDEWGK 479
                            D +   ++ L        + R+    +  D P+ R VL E G+
Sbjct: 331 -----------------DAIAAQIRLLHRICLNRGEWRKTHALVFKDRPDYRFVLGEKGE 373

Query: 480 IVSVAVRERLDAHMLIEDYMIAANVAAAKALEAKKAPVMYRVHETPGRDKLVALKEYLAT 539
           ++ +    R  A+ ++E+ MI+AN+ AA+ L  K    +Y VH         AL   L T
Sbjct: 374 VLDIVAEPRRIANRIVEEAMISANICAARVLRDKLGFGIYNVHTGFDPANTEALAALLKT 433

Query: 540 FDIDFALGQVIRPSTFNQLIKKVGESEEKEQIMTQILRSQTQAYYAPQNMGHFGLALGSY 599
            D+     +V+    F +L +++ +++    + ++I R Q+ A  + +   HFGL L +Y
Sbjct: 434 HDVHVDPEEVLTLPGFCKLRREL-DAQPSGFLDSRIRRFQSFAEISTEPGPHFGLGLEAY 492

Query: 600 AHFTSPIRRYADLLVHRALVGAYDLELPAPKGKAI---PDRSSLSQEDYENMGRVGEMIS 656
           A +TSPIR+Y D++ HR L           KG+ I    + ++L   D   + R+     
Sbjct: 493 ATWTSPIRKYGDMVNHRLLKAII-------KGETIARPQEDTTLQMADRRRLNRM----- 540

Query: 657 GHERRAMEAERETIDRYVAAFLSAHVGEVVK--ARITGVQNFGFFATVEGLGGDGLVPVS 714
                   AER+  D   A FL    G   +  A I  +   G    +   G    +P  
Sbjct: 541 --------AERDVGDWLYARFLQDKAGTDTRFAAEIIDISRGGMRVRLVDNGAVAFIPAP 592

Query: 715 TLGA 718
            L A
Sbjct: 593 FLHA 596