Pairwise Alignments

Query, 804 a.a., '3'-to-5' exoribonuclease RNase R' transl_table=11 from Sphingobium sp. HT1-2

Subject, 825 a.a., ribonuclease R from Dickeya dianthicola ME23

 Score =  342 bits (878), Expect = 4e-98
 Identities = 250/741 (33%), Positives = 366/741 (49%), Gaps = 66/741 (8%)

Query: 23  PTRQQVMDFITESDTPAGKREIAKAFGLKGQEKI-ALKALLKDMADEGLLDIGPARAFHK 81
           P+R+ +++ + + DTP  + E+A    L   E++ AL+  L+ M  +G L     + +  
Sbjct: 19  PSREYILEHLAKRDTPISREELATDLQLTSDEQLEALRRRLRAMERDGQLVFTRRQCY-- 76

Query: 82  MGGVP-KVTVLRIVDVDDTTLIATPERW---EAEGQPAPRIRVVERGKRGALTIGDRILA 137
              +P K+ +LR       T++   + +     EG+        E+ K   +  GD +LA
Sbjct: 77  --ALPEKLDLLR------GTVLGHRDGYGFLRVEGRKDDLYLSAEQMK--TVIHGDVVLA 126

Query: 138 RT--EEAGKGWLAHPMKKLAKATEMLLGVVEEMADGKLWLRPVDKRIRKDT--PISDIGT 193
           +   E+         ++ L   T  ++G     A G  ++ P D R+  D   P   I  
Sbjct: 127 QPLGEDRRGRREGRIVRILEPRTNQIVGRYFTEA-GTGFVVPDDSRLSFDILIPSEFIAG 185

Query: 194 AKKGDLVLAEPTGRPPRIS---ARVTDILGDPFAPRSFSLIAIHKHGIPHVFPEAVEEEA 250
           A+ G +V+ E T R  R +    ++ +ILGD         IA+  H IPH +P  VEE+ 
Sbjct: 186 ARMGSVVVVELTQRATRRTKAIGKIVEILGDNMGTGLAVDIALRTHEIPHSWPPKVEEQV 245

Query: 251 VT-ASKLPLHEDK-REDLRHLPIVAIDPVDARDHDDAVWAAPDEDPTNEGGYKAIVAIAD 308
              A ++P    K R DLR LP+V ID  DARD DDAV+     +    GG++  VAIAD
Sbjct: 246 SDLADEVPEDAKKGRIDLRSLPLVTIDGEDARDFDDAVYC----EKKRGGGWRLWVAIAD 301

Query: 309 VSYYVRPGSALDREARKRGNSVYFPDLVVPMLPHQLSSDMCSLRAGQDRAAMACHLVIDA 368
           VSYYVRPG+ALD EAR RG SVYFP  VVPMLP  LS+ +CSL    DR  M C + +  
Sbjct: 302 VSYYVRPGTALDHEARARGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTVST 361

Query: 369 QGKVKSFRFSRAIIRVAAVLAYENAQAAIDALSSVRPEPVEGQGRAEGEAASPAAQQAAS 428
           QGK+  + F  A++   A L Y    + +    ++R            E   P       
Sbjct: 362 QGKLSGYTFYEAVMSSHARLTYTKVWSILQGDEALR------------EHYQPLVAP--- 406

Query: 429 TSLSPNGVDLVEHALKPLWACWALLRKAREKRDPLALDLPERRVVLDEWGKIVSVAVRER 488
                         L+ L   + +L  ARE R  +A +  E + + +   +I  V    R
Sbjct: 407 --------------LEELHQMYKVLDHAREVRGGIAFETEEAKFIFNAERRIERVEAVVR 452

Query: 489 LDAHMLIEDYMIAANVAAAKALEAKKAPVMYRVHETPGRDKLVALKEYLATFDIDFALGQ 548
            DAH LIE+ MI AN++AAK +E  + P ++RVH+ P  D ++AL+  L    +    G 
Sbjct: 453 NDAHKLIEECMILANISAAKFVEKNEEPALFRVHDQPSEDHVLALRSVLGELGLTLKGGM 512

Query: 549 VIRPSTFNQLIKKVGESEEKEQIMTQILRSQTQAYYAPQNMGHFGLALGSYAHFTSPIRR 608
             +P  + +L+  +    + E + T +LRS  QA Y P+N GHFGLAL SY HFTSPIRR
Sbjct: 513 KPQPKDYAELMNSIAGRPDHEMLQTMLLRSMKQAVYDPENRGHFGLALTSYGHFTSPIRR 572

Query: 609 YADLLVHRALVGAYDLELPAPKGKAIPDRSSLSQEDYENMGRVGEMISGHERRAMEAERE 668
           Y DL +HRA      ++      KA    S     D+  M ++GE  S  ERRA EA R+
Sbjct: 573 YPDLSLHRA------IKYLLSDRKACWTHSGGWHADFNEMLQLGEHCSMTERRADEATRD 626

Query: 669 TIDRYVAAFLSAHVGEVVKARITGVQNFGFFATVEGLGGDGLVPVSTLGAEHFFFDEAGK 728
             D     F+  HVGE     I+ V  FGFF  +  L  DGLV VSTL  +++ +D  G+
Sbjct: 627 VADWLKCDFMQDHVGEAFTGIISSVTGFGFFVRLNDLFIDGLVHVSTLDNDYYRYDNVGQ 686

Query: 729 ALQGVESGDRYTVGQRLELRL 749
            L G   G  Y +G  +++R+
Sbjct: 687 RLIGESRGQVYRLGDEVQIRV 707